Alistipes dispar: A5CPEGH6_08010
Help
Entry
A5CPEGH6_08010 CDS
T06629
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ada
Alistipes dispar
Pathway
ada03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ada00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A5CPEGH6_08010 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ada03021
]
A5CPEGH6_08010 (rpoB)
03400 DNA repair and recombination proteins [BR:
ada03400
]
A5CPEGH6_08010 (rpoB)
Enzymes [BR:
ada01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A5CPEGH6_08010 (rpoB)
Transcription machinery [BR:
ada03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A5CPEGH6_08010 (rpoB)
DNA repair and recombination proteins [BR:
ada03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A5CPEGH6_08010 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BBL06163
UniProt:
A0A4Y1WYL3
LinkDB
All DBs
Position
complement(917210..921070)
Genome browser
AA seq
1286 aa
AA seq
DB search
MSTAKTQQRISFSTVKNRVPYPDLLEVQLKSFRDFFQMDTTAENRKNEGLYKVFQENFPI
TDTRNNFVLEFIDYYIDPPRYSIEECLERGLTYSVPLKAKLKLYCTDDEHEDFGVVVQDV
YFGTIPYMTERGTFVINGAERVIVSQLHRSPGVFFGQSMHTNGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGYEADQQILEIFDLADEVKVSKATLKKAVGRK
LAARVLSTWVEDFVDEDTGEVVSIERNNVIVDRETVLEEEHIDQIIESGAKTILLHKENL
SGIDFSIIYNTLQKDPCNSEKEAVVYIYRQLRASEPPDEATARDVIEKLFFSDKRYDLGD
VGRFRINKKLDLDIDPAIRTLTREDIIAIIKYLIQLINSKADVDDIDHLSNRRVRTVGEQ
LSNQFSVGFVRMARTIRERMNVRDNEVFTPVDLINAKTLSSVINSFFGTSQLSQFMDQIN
PLAEITHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYA
KISPMGFIETPYRTVENGKVDMDNAHIRYYSAEEEEDLVAAQANTPIDEEGNFLEPDRIK
AREGADFPVVTASEVHLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLVTT
EAPIVGTGIEKDMISDSRIQIVAEGDGEVVFADATKIQIKYERTEDEILASFDPEVTTYT
LPRYRRTNQNTSITLRPTVLTGDKVTKGQILTEGYSTQNGELALGRNLKVAYMPWKGYNF
EDAIVISERIQREDIFTSVHVDEYIMEVRDTKRGVEELTSDIPNVSEDATKDLDANGIVR
IGANIHPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKAQPSLHGVVIDTK
LYSRASKEGKKGKSAEKMQLDKLDEKFSAEIAELTKRLVSKLWTLLQGKTTTGITDYFGV
ELYPAGTKFSQKLLEEIARKSSDEKTGVVMGYLNLGSCNWTGDAHTDALIEATINNYTIE
WKKADAAIKREKYNLTNGDELPQTGVIQMAKVYIAKKRKLKVGDKMAGRHGNKGIVAKIV
RDEDMPFLEDGTIVDICLNPLGVPSRMNLGQIYEAVLGWAGRELGVKFATPIFDGASLDQ
INEYTAQAGLPHSGRTYLYDGGTGERFDQPATVGVTYMLKLGHMIDDKMHARSIGPYSLI
TQQPLGGKAQFGGQRFGEMEVWALEGFGAANILQEILTIKSDDVMGRAKAYEAIVKGENL
PKPGIPEAMNVLLHELRGLALSVKLE
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagcaaaaacacaacaaagaatcagcttttcgacagtcaagaaccgggttcct
tacccggatctgctggaggtacagcttaaatcattccgggactttttccagatggacacc
acggccgagaatcgcaaaaacgaggggctgtacaaggtgtttcaggagaatttccccatc
accgatacccggaacaactttgttctggagtttatcgactactatatcgacccgccgcgc
tattcgatcgaagagtgcctggagcgcggtctgacgtacagcgttccgctgaaagccaag
ctgaaactctattgcacggacgacgagcacgaggatttcggcgtcgtcgttcaggacgtg
tacttcgggacgatcccctatatgaccgaacgtggaacgttcgtcatcaacggtgcggag
cgtgtcatcgtatcccagttgcaccgttcgccgggtgtgttcttcggacagagcatgcac
accaacggcaccaagctctattcggcgcgtatcatccccttcaagggttcgtggatcgag
ttcgctacggacatcaacaacgtcatgtacgcctacatcgaccggaagaagaagctgccc
gtcaccacgctgctgcgtgcgataggttacgaggcggaccagcagattctcgagattttc
gatctcgcggacgaggtgaaggtgtcgaaggccaccctgaaaaaggccgtgggccgcaag
ctcgccgcacgcgtcctctcgacgtgggtcgaggacttcgtggacgaggacacgggcgag
gtggtgtcgatcgagcgcaacaacgtgatcgtggaccgtgagacggtcctcgaggaggaa
catatcgaccagatcatcgagagcggcgccaagacgatcctgctgcacaaggagaacctc
tcgggcatcgacttctcgatcatctacaacacgctgcaaaaagacccctgtaactccgag
aaggaggccgtggtttacatctacaggcagttgcgcgcctcggagccgcccgatgaggcc
acggcgcgcgacgtcatcgagaagctcttcttctcggacaagcgttacgacctgggcgac
gtgggccgtttccgcatcaataagaagctggacctggacatcgatccggctatccgaacc
ctgacgcgggaggacatcatcgccatcatcaaatacctgatccagctgatcaactcgaag
gccgacgtggacgatatcgaccacctgtcgaaccgccgcgtccgcaccgtgggcgaacag
ttgtcgaaccagttctcggtgggcttcgtgcgcatggcgcgcacgatccgcgagcgcatg
aacgtgcgtgacaacgaggtgttcacgccggtggacctgatcaacgccaagaccctttcg
tcggtgatcaactccttcttcggcacttcgcagctctcgcagttcatggaccagatcaac
ccgctggccgaaatcacgcacaagcgccgtctgtcggccctcggtcccggcggtctgtcg
cgcgaccgcgccggtttcgaggtgcgcgacgtgcactatacgcactacggacgtctctgc
ccgatcgagtcgccggaaggcccgaacatcggtctgatctcgtcgttgtgcgtctatgcg
aagatttcgcccatgggcttcatcgagacgccctaccgtacggtggagaacggaaaggtg
gatatggacaatgcgcatatccgctactattcggccgaagaggaggaggatctggtcgcc
gcgcaggcgaacacccccatcgacgaggagggcaacttcctggagccggaccgcatcaag
gcgcgcgaaggcgccgacttccccgtggtgacggcttccgaggtgcatctgatggacgtg
gctccgaaccagatcgcctcgatcgccgcgagcctcatcccgttcctcgagcacgacgac
gccaaccgtgcgctgatgggctcgaacatgatgcgccaggccgtgcccctggtgaccacc
gaagccccgatcgtcggcacgggtatcgagaaggacatgatttcggacagccggattcag
atcgtggccgagggcgacggcgaggtggtttttgccgacgccacgaagatccagatcaag
tacgagcgcacggaggacgagatcctcgcgtcgttcgatccggaggtcacgacctatacg
ctgccgcgttaccgccgcacgaaccagaacacctcgatcacgctgcgtcccaccgtcctg
acgggcgacaaggtcacgaaggggcagatccttacggagggatactcgacgcagaacggc
gagctggcgctgggccgcaacctgaaggtggcctacatgccctggaaggggtacaacttc
gaggacgccatcgtgatctcggagcgcatccagcgcgaggacatcttcacgtcggtgcac
gtggacgagtacatcatggaggtgcgcgacacgaagcgcggcgtcgaggagctgacctcg
gacatcccgaacgtttcggaggacgccacgaaggacctcgacgccaacggtatcgtccgc
atcggcgccaacatccacccgggcgacatcctcatcggcaagatcaccccgaagggcgag
agcgatccgtcgcccgaggagaagctcctgcgcgcgatcttcggcgacaaggccggcgac
gtgaaggacgcttcgctcaaggcgcagccttcgctgcacggcgtggtgatcgacacgaag
ctctacagccgcgccagcaaggagggcaagaagggcaagagtgccgagaagatgcagctc
gacaagctcgacgagaagttctcggccgagatcgccgagctgaccaagcggctcgtgtcc
aagctctggacgctgttgcagggcaagactaccacgggcatcaccgactacttcggcgtg
gagctctatcccgccggtacgaagttctcgcagaagttgctggaggagatcgcccgcaag
tcctcggacgagaagacgggcgtggtgatgggctacctgaacctcggctcgtgcaactgg
acgggcgacgcgcatacggacgccctgatcgaggccacgatcaacaactacacgatcgag
tggaagaaggccgacgccgccatcaagcgcgagaagtacaacctcacgaacggcgacgag
ctgccgcagacgggcgttatccagatggccaaggtctatatcgccaagaagcgcaagctg
aaggtgggcgacaagatggccggacgccacggcaacaagggtatcgtggccaagatcgtg
cgcgacgaggacatgccgttcctcgaggacggaacgatcgtcgatatctgcctcaacccg
ctgggcgtgccttcgcgaatgaacctcgggcagatctacgaggccgtgctcggctgggcc
ggccgcgagctgggcgtgaaattcgccacgccgatcttcgacggcgcctcgctcgaccag
atcaacgagtacacggcccaggccggactgccgcacagcggccgcacgtacctctacgac
ggcggcacgggcgagcgtttcgaccagcctgccacggtgggcgtcacctacatgctcaag
ctgggccacatgatcgacgacaagatgcacgcgcgttcgatcggtccctactcgctcatc
acgcagcagccgctcggcggtaaggcgcagttcggcggccagcgtttcggcgagatggag
gtctgggcgctcgagggcttcggcgccgccaatatcctgcaggagattctgaccatcaag
tccgacgacgtgatgggccgcgccaaggcttacgaggcgatcgtcaagggagagaacctg
cccaagccgggtatcccggaggcgatgaacgtgctgctgcacgagcttcgcggtctggcc
ctttcggtcaaactcgagtaa
DBGET
integrated database retrieval system
