Alternaria dauci: 96080375
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Entry
96080375 CDS
T10615
Symbol
ACET3X_000053
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
adac Alternaria dauci
Pathway
adac03018
RNA degradation
Brite
Enzymes [BR:
adac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
96080375 (ACET3X_000053)
Messenger RNA biogenesis [BR:
adac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
96080375 (ACET3X_000053)
mRNA degradation factors
3'-5' decay
Ski complex
96080375 (ACET3X_000053)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
96080375
NCBI-ProteinID:
XP_069310295
LinkDB
All DBs
Position
1:join(221755..224454,224505..224787,224836..225023,225073..225252,225303..225769,225933..225966)
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AA seq
1283 aa
AA seq
DB search
MEALSGELEKLRLHSSSLDEDGIDSIAGEQRPPKRQRKTKHVIKKELEQQFLTPSKSFNT
QWLNQLQQRWDAPTNYRSLFQIAPTQTRTIIRFTREGLEGRVTGYKEVTVPANSATAKNS
TSLLRKPANRAEFVRGAAGFFPFAPGGLDGVEAVAAIEDEAIQQQEDANGKRAGGLDRVI
NFSAEGGLLEIPPGFTRGLDFQKKPTTDAKAAQEVEDTLAEAGAAPKDTEADDEETTEKT
AANGEEPDEDQPGDDEIDALLPVEFPALAPHGPLAMSSARKGGREWAHMVDIDRDITNFK
ELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAI
YTSPIKALSNQKFRDFRQTFDDVGILTGDVQIRPEASCLIMTTEILRSMLYRGADLIRDV
EFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDIYV
ISTPKRPIPLEHYLWAGKDIYKIVTADKKFIDNGWKAANDVLSGKDKIKEAPANAAQAGR
GGGGGRGGPPARGGQNQRGRGQQGGGRGGPRGGGPPAARGRGNIARTGRGGGRTTAAQDR
NIWVHLIQHLRSKDLLPACIFVFSKKRCEENAEALSNIDYCNAAEKSAIHMTIEKSLARL
SKEDRDLPQIKRLRELLSRGIAVHHGGMLPIVKEVVEILFAKTLVKVLFATETFAMGLNL
PTRTVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRGLDTVGTVIICAPGADEAPPAARL
RQMMLGEPTKLRSQFRLTYNMMLNLLRVEALKIEEMIKRSFSENATQALLPEHQGKVKVS
EAELEKIKREPCDICDIDLEACHQSCEDYKRLTNEMHLSLLINPIGRRALAKNRLIVYKK
DNKRTAGMLMQDGTSKGNEPTVKVLEVAQHQDRKPDDLLPYVGPFAKWFRKLPNNPKDLI
LKAAYVPLNDVECFTKTIIDVPDSVQNLGRKISKDALKLAQDQFLPLCGSWDYEDWDEYD
YSKIKSLKFRELAEARMKEGQNAVSKECLKCPNFLKHFAQEHDQWLIKENILALRQLMSD
QNLQLLPDYEQRIHVLKDLGFIDEGSRVELKGKVACEIHSADELVLTELVLENVLAEYEP
EEIVALLSAFVFQEKTDIEPTLTANLERGVAKIVEISEKVNKIQTLHQVILSADDSNDFV
SKPRFGMVEVVYEWARGMSFNRITDLTDVMEGTIVRVITRLDETCREVKNAARIIGDPTL
FQKMGTCQELIKRDICNCASLYL
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggaggccttgtctggagaattggaaaagctgcggctgcacagcagtagcctcgacgaa
gatggcatagactccatagctggcgaacaacggccaccgaagcgacaacgcaaaaccaaa
catgtcatcaaaaaggaactagagcaacaattcctgacgccctcaaagtctttcaacacg
cagtggctgaaccagcttcagcagcgctgggatgcgcccaccaattatcgcagcctgttc
cagatcgccccaacccagacccgaaccatcatccggttcacgcgcgaggggctagagggc
cgcgtcacgggatacaaagaagtcacggttccagcaaactcggcaacagccaagaactcg
acatctcttctcaggaagcctgccaacagggccgagttcgtacgtggagcagccggcttc
tttcctttcgcgcctggcggtcttgatggagtggaggcggtagctgctatcgaagatgag
gcaattcaacagcaagaggatgcaaatgggaaacgggccggtggccttgacagagtcatc
aacttcagtgctgaaggaggcttgctcgagataccgcccggatttactcgcgggctcgac
ttccagaaaaagccaaccacagatgccaaggctgcgcaagaggttgaagacacattggca
gaggcgggtgcagcccccaaggatacggaggccgatgacgaagagaccaccgagaagacc
gccgcgaacggcgaagagccagacgaagatcaacctggagacgacgagatcgacgccttg
ttaccagtagagttccctgcattggcccctcacggcccgcttgctatgagttctgcaagg
aaaggtggaagagagtgggctcacatggttgacattgaccgcgacatcaccaacttcaag
gaactcgttccggatatggcgcgcgagtggccctttgagctcgatactttccagaaagaa
gcagtgtaccatctggagaacggtgattcagtgttcgtagccgcacacacgtccgctggc
aagacagtagttgcagagtacgcgatcgcacttgctgcgaagcacatgacgaaagccatc
tacacatccccgatcaaagctttgagtaaccaaaagttccgcgatttccgccagacattc
gatgatgttggcattcttactggagatgtgcagataagacccgaagctagctgtctcatt
atgactaccgagattctccgaagtatgttgtaccgaggagcggatcttatccgagatgta
gagtttgtcatattcgatgaagtacactacgtcaacgatctggagcgaggtgtcgtctgg
gaggaggtcatcatcatgctgccagagcatgtgactctcatcctcctgtccgccactgtc
cccaacacgtacgagtttgcatcatgggttggccgcacaaaaaagaaggatatctacgtc
atctctaccccgaaacgtcccattcccctcgagcattatctgtgggctggaaaagatatc
tacaagatcgttacggcagacaagaaattcatcgataacggctggaaagctgcaaacgat
gtattgtccggaaaagacaagatcaaggaagcccccgcgaatgccgcccaagctggaaga
ggaggtggtggtggtcgaggaggaccacccgctcggggaggccagaatcaacgtggaaga
ggccaacaaggtggcggtcgcggtgggcctcgaggcgggggaccaccggcggccaggggc
cgtggtaacatcgccaggaccggtcgtggtggaggccgaacaacagccgcgcaagatcga
aacatctgggtccaccttatacagcatctccgaagcaaagacctgttgccggcttgcata
ttcgtcttctccaagaagcgctgcgaggagaatgccgaggcactttcaaacatcgactac
tgcaacgctgcagagaagagcgcgatacacatgaccatcgagaagtcgctagctaggctg
agcaaggaagaccgtgatcttcctcaaattaagcgtctgcgagagctgctcagccgaggt
attgctgtccaccacggtggcatgctgcccatcgtcaaggaggtcgtagagattctcttc
gccaagacacttgtcaaggtcctgtttgccacggagactttcgccatgggtctcaacttg
cccaccaggaccgtcgtgttctccggtttccgcaaacacgacggacgggagtttcgcgac
ctgcttcccggcgagtacacccagatggctggtcgcgcgggacgacgtggacttgacacc
gtcggtactgtaatcatatgtgcgcccggagcagatgaggcaccaccagcggcgagactc
cgtcagatgatgttgggtgagcctactaagctcaggtcacagttccgtctgacgtacaac
atgatgctcaaccttttacgtgtagaagctctgaagattgaagagatgattaagcgaagt
ttcagtgagaacgccacccaagcgctacttcctgaacatcaaggcaaagttaaggtctcg
gaagctgagctggaaaagatcaagcgcgaaccttgtgatatctgcgacatcgatctagaa
gcctgccatcagtcttgtgaagactacaagcgacttaccaacgagatgcatctgagtcta
ctcataaaccctatcggacggcgcgccctggccaagaatagactaattgtctataaaaag
gataataaacgcaccgccggtatgctgatgcaagacggtacaagcaaaggtaatgagcct
acggtcaaagtcttggaggtggcacaacaccaagatcgcaagccggacgaccttttgcca
tatgtcggtccttttgcgaagtggttccgcaagttaccaaataaccccaaggatctgatc
ctcaaggcagcctacgtgcccttgaacgatgtcgagtgctttaccaagaccatcatcgat
gttcctgattctgttcagaacctgggtcggaagatatccaaggatgccttgaagctggcg
caagatcagttcctgcccttgtgtggatcttgggactatgaagactgggatgagtacgac
tatagtaagatcaagagcctcaaatttcgcgaactcgcggaagcccgcatgaaggagggc
cagaatgcggttagcaaagagtgcctgaagtgtccgaacttcttgaaacacttcgcccaa
gagcatgatcagtggctgatcaaggagaatatccttgccctccgccagctcatgtcagat
caaaatttacagctactccctgactacgaacagcgcatccacgtcctcaaggatctcggc
tttattgacgaaggttcgcgcgtggagctcaagggcaaggtagcctgtgagatccattcg
gccgacgagctggtccttaccgaactcgtgttagagaacgtcctcgccgagtacgaaccg
gaggagattgtcgcgctactgtcagcctttgtcttccaagagaagaccgacatagagcct
acgctaacagcaaatctggaacggggagtcgccaaaatcgttgagatctctgagaaggtc
aacaagatccaaaccctgcatcaggtcatcctctcggcagatgactcgaacgactttgtc
agcaagccccgcttcggcatggtcgaagtcgtgtatgagtgggcgaggggcatgtcattc
aatcgcataactgacctgacagatgtcatggaaggcacaattgtccgcgtcatcacgcgg
ttggatgagacgtgccgcgaggtcaagaacgcggctcggattattggtgacccgactctg
ttccaaaaaatggggacgtgccaggaactcatcaaacgggacatttgtaactgcgcaagc
ttgtacctgtaa
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integrated database retrieval system
