Alternaria dauci: 96082407
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Entry
96082407 CDS
T10615
Symbol
ACET3X_002085
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
adac Alternaria dauci
Pathway
adac03008
Ribosome biogenesis in eukaryotes
adac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adac00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
96082407 (ACET3X_002085)
09123 Folding, sorting and degradation
03018 RNA degradation
96082407 (ACET3X_002085)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adac03021
]
96082407 (ACET3X_002085)
03019 Messenger RNA biogenesis [BR:
adac03019
]
96082407 (ACET3X_002085)
03009 Ribosome biogenesis [BR:
adac03009
]
96082407 (ACET3X_002085)
03016 Transfer RNA biogenesis [BR:
adac03016
]
96082407 (ACET3X_002085)
Transcription machinery [BR:
adac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
96082407 (ACET3X_002085)
Messenger RNA biogenesis [BR:
adac03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
96082407 (ACET3X_002085)
Ribosome biogenesis [BR:
adac03009
]
Eukaryotic type
Pre-60S particles
RNases
96082407 (ACET3X_002085)
Transfer RNA biogenesis [BR:
adac03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
96082407 (ACET3X_002085)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Vma12
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
96082407
NCBI-ProteinID:
XP_069312327
LinkDB
All DBs
Position
1:complement(join(6871213..6871247,6871385..6871505,6871707..6871815,6871878..6874330))
Genome browser
AA seq
905 aa
AA seq
DB search
MGVPAMFRWLSQKYPKIVSTVQEELPKKVGDTVIPVDRTGPNPNGEEFDNLYLDMNGIVH
PCSHPEDKPAPKTEADMMMAIFEYTDRCVGMVRPRKLLYMAVDGVAPRAKMNQQRSRRFR
AAKEAKEKDDERAEFQKMLNSQKASRGEDISSLEEVIEKTWDSNAITPGTPFMHLLAESL
QYWCAYKFTTDPSWKDMKVIISDASVPGEGEHKIMNFIRSQRSMPTHDPNTSHVIYGLDA
DLIMLSLATHEPYFRVLREDVFYDSGKDKVCTRCGRKGHIRSNCEFPDDGKKLTEEEAAE
EWSNSEHQLKPFIWLHTNILREYLAVEMDTPKRKFKYDLERSLDDWVFMCFFVGNDFLPH
LPSLEIRDQGIDLLISIWRDLAAEMDDYVTKDGFPDMRRVQQIMSALATREAGIFKKRKE
VSDRQAANRARREAQNNNNKRQRTEASGPPGFKRAKENTDTYTSAGIVFFDPKDAQSKEV
RDVHKDIMHTRDAQSNKSAAARLKELMKAKADGTAPPEPTAAEPAPEAESAVLGKRKADE
VEDLDNGTPGRNTPVVPESPKKEDGQQEDTIMLWEDGYEERYYEQKFGVDPNDIAFRNKV
ARQYAEGLCWVLAYYMQGCPSWTWYFPHHYAPFAADFVGLEDMDPRKLFEKGTPFHPYEQ
LMGVLPAASNHAIPEPFRILMEDPDSNIVDFYPQDFPIDLNGKKFAWQGVAILPFIDSKR
LLDAMATKYPELSDDERKRNEFGKETLIFSQESGLFDDVEKALYRKGQQKYKIDPAKSRA
LHGDVEPHDLFVMDSQLVPPFDADGITEFEVTQDRSMRVYYEMPSLSSARAHQSVLLPGV
RLPKPALSPGEAESGGYGAPPANFAPPFPGAAPGANFIPPPPFAAGNFPPPPPPGWESIE
GGEVL
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccggccatgttccgctggctcagccagaaataccccaagatcgtgtccact
gtgcaagaggagctgcctaaaaaggtcggcgacacggtcatccccgtagaccgcaccggc
cccaatcccaacggcgaagagttcgacaacctctacctcgacatgaacggcattgtgcat
ccctgctcccaccctgaagataagcctgcgcccaagactgaggccgacatgatgatggcc
atcttcgagtacactgaccgctgtgtcggcatggtccgtccccgtaagcttctctacatg
gctgtcgatggcgttgcgcctcgtgccaagatgaaccagcagcgctcgcgccgtttccgc
gccgcaaaagaggcaaaggaaaaggacgatgagcgcgctgaattccaaaagatgctcaac
tcgcagaaagcaagtcgtggcgaggacatttctagcctcgaagaggtcatcgagaagacg
tgggactcgaatgcaatcacaccgggtacccccttcatgcatctccttgccgagagtctt
caatactggtgtgcctacaagttcacaaccgacccctcgtggaaggacatgaaagtcatc
atctccgatgcatctgtgcctggtgagggcgaacacaagatcatgaactttattcgctca
cagcgctctatgcccacacatgacccaaacacttcgcacgttatctacggcttggacgcc
gatttgatcatgttgagtcttgctacccatgagccttatttccgtgttcttagagaagac
gtcttctacgactcgggtaaggacaaggtctgcacgcgctgcggccgcaagggacatatc
cgaagcaactgtgaattccccgacgatggcaagaagctcaccgaggaggaagccgctgaa
gaatggtccaactcggagcaccagctcaagccgttcatctggctgcataccaacatcttg
cgcgagtacctggctgtagagatggacacgcccaagcgcaagttcaagtatgatctagaa
cgctcgctcgatgactgggtcttcatgtgtttctttgtcggtaatgatttcctgccacat
ctgcccagtcttgagattcgcgaccagggcatcgacttgctcatcagcatctggcgcgat
ctcgccgctgagatggacgactacgtgaccaaagacggtttcccagacatgcgtcgtgtg
cagcagatcatgtccgcgctggcgacgcgagaagctggcatcttcaagaagcgaaaggaa
gtctcggatcgccaggcagcaaaccgggccagacgcgaggcacagaacaacaacaacaag
cgccaacgaacagaagcaagcggcccgcctggcttcaagcgtgccaaggagaacaccgac
acgtacacgagcgcaggtatagtattcttcgaccccaaggacgcgcagtcaaaggaagtg
cgcgatgtgcacaaggacatcatgcacacccgagacgcccagtccaacaagagcgcagca
gctcgcctcaaggagctcatgaaggccaaggccgacggtacagccccgcctgagccgacc
gcggcagagcccgctcccgaagccgaaagtgccgtcctcggaaagcgcaaggcagacgag
gtcgaagaccttgacaacggcacacccggccgcaacacgcccgtcgtccccgagtcgccg
aagaaggaagatggccagcaagaagatacgatcatgctctgggaggacggctacgaggag
cgttactacgagcaaaagtttggcgtcgaccccaacgacattgccttccgcaacaaggtc
gcgcgtcagtacgcagagggtctctgttgggtgctggcatactatatgcagggctgcccg
agttggacctggtacttccctcaccactacgcgccctttgccgccgactttgttggcctc
gaagacatggatccgcgcaagttgtttgaaaagggcacgccattccacccttatgagcag
ctcatgggcgtcttgcccgccgcgtcaaatcacgccatccccgagcctttccgcatcctc
atggaagaccctgacagcaacattgtagacttttatccacaagatttcccgattgatctc
aacggcaagaagtttgcgtggcagggtgtcgcgattctgccgtttatcgattcgaagcgc
ttacttgatgccatggcgacaaagtacccggagctctcggacgacgagcgcaagcgcaat
gagtttggtaaggagacgctcatcttttcgcaggagagcgggctctttgacgacgtggag
aaggcgttgtatcgtaagggtcagcaaaagtacaagatcgatccggcgaagagccgcgcg
ctgcatggcgacgtggaaccgcatgatctgtttgtgatggatagccagcttgtgccgccg
ttcgatgcggacggcattaccgagtttgaggttacgcaggataggagtatgagagtatac
tacgaaatgcccagcctaagctccgctcgcgcccatcaatccgtgctcctccccggcgtc
agactacccaaaccagcgcttagccctggcgaagcggaatcgggcggttacggtgctccg
ccagccaactttgcgcctccattccctggagctgctcctggtgctaacttcatccctcct
ccgccctttgcggcaggcaacttcccgcctccaccgccaccggggtgggaatccattgag
ggaggagaggttttatag
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