Alternaria dauci: 96084602
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Entry
96084602 CDS
T10615
Symbol
ACET3X_004280
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
adac Alternaria dauci
Pathway
adac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
96084602 (ACET3X_004280)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adac03019
]
96084602 (ACET3X_004280)
Messenger RNA biogenesis [BR:
adac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
96084602 (ACET3X_004280)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
96084602 (ACET3X_004280)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
96084602
NCBI-ProteinID:
XP_069308258
LinkDB
All DBs
Position
3:1884386..1885021
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AA seq
211 aa
AA seq
DB search
MALPSVALPGQLLGSVEKYSPGPGTHIHDSRIYASIAGPVFSSPSHPTTNTSSKSTKLAP
LLSITRPPTSTDPGILGPNSGGGVPLLPTVNSTVLVRITRLGPRFASAEILVIDDAVCRE
AFLAQIRREDIRATEKDKIKIEESFRVGDLVRGTVISLGDSGNYYVATDRNEFGVVLARS
EEGRVMHPVSWKEFRDPVSGKTEARKAAKPF
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcccttcagtagcgctaccgggacaactgctcggcagtgtcgaaaaatacagt
cccggtccagggacgcacatccacgactcgagaatctacgcctcaatagctggacccgtc
ttctcgtcaccgtcacaccctaccaccaacacatcctccaaatccaccaagctcgcaccc
cttctctccataacgcgcccgcccacctccaccgaccctgggatcctcggccccaactct
ggcggcggcgtaccactcctccccactgtcaacagcaccgtcctagtccgcataacgcgt
ctcggcccacgcttcgccagcgcagagattctcgtcattgacgacgctgtttgccgcgaa
gcctttctcgcgcagattcggcgcgaagacattcgggctacggaaaaggacaagatcaag
attgaagagagtttccgcgtgggtgacttggtgaggggcacggtgatcagtttgggtgat
agcggcaattactatgttgctaccgatcggaatgaattcggtgttgtcctggcgagaagt
gaagagggtagggtcatgcatccggttagttggaaggagtttagggatccggtgagtggg
aaaacagaggcgagaaaggctgccaagccgttttga
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