Alternaria dauci: 96085610
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Entry
96085610 CDS
T10615
Symbol
ACET3X_005288
Name
(RefSeq) hypothetical protein
KO
K15542
polyadenylation factor subunit 2
Organism
adac Alternaria dauci
Pathway
adac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
adac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
96085610 (ACET3X_005288)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adac03019
]
96085610 (ACET3X_005288)
Messenger RNA biogenesis [BR:
adac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
96085610 (ACET3X_005288)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
ASA1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
MIOS_WD40
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
WD40_like
Beta-prop_HPS5
PAC11
Beta-prop_Vps41
Beta-prop_WDR11_2nd
Nucleoporin_N
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
96085610
NCBI-ProteinID:
XP_069307332
UniProt:
A0ABR3UJV3
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All DBs
Position
4:complement(join(2226210..2228086,2228242..2228299))
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AA seq
644 aa
AA seq
DB search
MEREYHRPDFEGGLRPRPKRAVTDYGSTTVQWMRNRRPRYKNAPMAEMERPSASYIVDMQ
PPAARVASAAESIPAKAVHSSLNKVKHPINVVKWTPEGRRLLTGSTSGEFTLWNGMGFNF
ETIMQAHEAAIRAVEYTSTDDWLLSADQTGVVKYWQTNFNNVKEIQAHTEAVRGLSIAPT
DTKFVTCADDTTLKIWDFASSTEESTLTGHGWEVKSVDWHPHKGLLVSGSKDHQVKFWDP
RTGRCLTTLHGHKNPISKTMFEPVQGNMLATCARDHTARIFDLRMMRDVLLLKGHEKDII
TMAWHPMHKNLLSTGGVDGSIHHYLLDEQNPPTGVAPSISPYDAADSQNAPSQTIYPAHS
LQYAHDFTVWTMDWHPLGHILASGSNDRVTRFWTRPRPGDTNYVNDRYHIGQAAAEAQGT
FDRGQGRRQKIEEEEQEAEDEAEGLVDQKMPSKNPAGGFLPPGLSLPGLNAAPDGTSSSL
PGIGGANHLPVPPPPGSMPFPPPNGGGPPLPPLNGMDPSRLAQLIASGSLPPPPIPHGHG
PPPPNANGPPPPFPPPNFPGFPQGMPAGMPPFPPGMPPPGFPGFPPPPGGMAAPPPGWPG
PPPPPQQQQGGPVGADGIRRRAPLPDQQDALKAEMNQGRYRKAR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgaataccatcgcccagactttgagggagggttgcgacctcgaccgaagcga
gcggtcaccgattatggctcaaccacagtgcaatggatgcgcaatcgacgcccgcgatac
aaaaatgcacccatggcggagatggagcggccaagtgcaagctacattgtcgatatgcag
cctccagcagcacgcgtcgccagcgcagccgagtcgataccagctaaagccgtacattct
tccctgaacaaagtcaaacatcccataaacgtagtcaaatggactccggaaggtcggcga
ctgctcaccggctccactagcggcgaattcactctatggaacggaatgggcttcaacttc
gaaaccattatgcaggcgcacgaggctgcaattcgagctgtcgaatacacgtccaccgac
gactggctcttgtcagcagaccagacaggcgtcgtcaaatactggcagacaaacttcaac
aacgtcaaggagatacaagcgcacacggaagcggtgcgagggctctccatcgcacccaca
gacacaaagtttgtgacatgcgccgatgacaccacactgaagatctgggatttcgcgtcg
agcacagaagagtcaacattgacaggacatggatgggaggtcaagtcggttgactggcat
ccgcacaaggggctgctagtatcagggtcaaaggatcaccaagtcaagttttgggatccg
cggacagggcgctgtcttacgacgcttcatggacataaaaacccaatatcaaaaaccatg
ttcgagcccgtccaaggaaacatgctagcaacatgcgcccgtgatcacacagcccgcatc
tttgatctccgaatgatgcgcgatgtcttgctgctcaagggacacgaaaaggacattatc
acaatggcgtggcacccaatgcacaagaatctgctgtccaccggtggtgtcgatggcagc
atacaccactatctcctcgacgagcaaaacccccctactggtgtcgcaccgtcaatatcg
ccttacgacgccgccgattcgcaaaacgcgccctcacaaactatataccccgcacatagc
ctgcaatacgcccacgatttcacagtctggacaatggattggcatccgctgggccacatc
cttgcgtctggttccaacgacagggtcacgcgtttctggacacggcctcggccaggcgac
acaaactacgtcaacgaccgctaccacattggccaggctgcggcagaggcacaaggcaca
ttcgaccgcggccagggcaggcgacagaagatagaggaagaagagcaggaagccgaggac
gaggccgagggtctggtcgatcagaaaatgccgtcaaagaaccctgctggtggtttcctg
cctcccggtctctccttaccaggactcaatgcagcgccagacggcacatccagttctcta
cccggtattggcggggcaaatcatcttccagtgccccctccaccaggtagcatgccattc
ccaccgccaaacggaggtggcccgcctttgcctcctctcaatggcatggacccctctcgc
cttgcacaactcatcgcgtcaggctccctaccgccaccgcccatacctcatggtcacggt
cctccaccaccaaacgctaatggtcctcctccgcctttcccaccaccaaatttccccggc
ttcccacaaggcatgccagccggtatgccaccgtttcccccgggtatgccacctccaggc
ttcccgggcttccctcctccacctggtggtatggctgccccgccaccaggatggcctggt
cctcctccacccccgcaacagcaacaagggggaccagtgggcgcagatggtattaggaga
agagcaccgttgccggatcagcaagatgctttaaaagcagagatgaaccagggtcgatac
aggaaagctaggtag
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