KEGG   Alternaria dauci: 96088526
Entry
96088526          CDS       T10615                                 
Symbol
ACET3X_008204
Name
(RefSeq) hypothetical protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
adac  Alternaria dauci
Pathway
adac03018  RNA degradation
adac03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:adac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    96088526 (ACET3X_008204)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    96088526 (ACET3X_008204)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:adac03019]
    96088526 (ACET3X_008204)
   03041 Spliceosome [BR:adac03041]
    96088526 (ACET3X_008204)
Messenger RNA biogenesis [BR:adac03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     96088526 (ACET3X_008204)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     96088526 (ACET3X_008204)
Spliceosome [BR:adac03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    96088526 (ACET3X_008204)
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 96088526
NCBI-ProteinID: XP_069303806
UniProt: A0ABR3U9N1
LinkDB
Position
8:complement(join(774136..774164,774219..774332,774383..774537,774586..774624,774767..774771))
AA seq 113 aa
MILRNHPIAPDHGLTKSRVTSFITMSTNGESPAPEAAGDSRDPSGFLSEIIGAPVTVKLN
SGIIYKGDLQSVDGYMNIALERCKEVSEGRVTRNWGDAFVRGNNVTYICADKA
NT seq 342 nt   +upstreamnt  +downstreamnt
atgatattgaggaaccatccaatcgcacctgatcacggactcacgaaatcacgcgtcacc
agcttcatcaccatgtccaccaacggcgaaagcccagcacccgaagccgccggcgactca
cgagaccctagcggctttctcagtgagatcatcggagctcctgttactgtcaagctcaac
tctggcatcatctacaaaggcgatctccagtcagtagacggctacatgaacattgcactg
gaacgatgcaaggaggtctcagagggacgtgtcacccgcaattggggagatgctttcgtc
cgtggtaacaacgttacatacatctgtgcagacaaggcatga

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