KEGG   Alternaria dauci: 96088646
Entry
96088646          CDS       T10615                                 
Symbol
ACET3X_008324
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
adac  Alternaria dauci
Pathway
adac03018  RNA degradation
adac03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:adac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    96088646 (ACET3X_008324)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    96088646 (ACET3X_008324)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:adac03019]
    96088646 (ACET3X_008324)
   03041 Spliceosome [BR:adac03041]
    96088646 (ACET3X_008324)
Messenger RNA biogenesis [BR:adac03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     96088646 (ACET3X_008324)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     96088646 (ACET3X_008324)
Spliceosome [BR:adac03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    96088646 (ACET3X_008324)
SSDB
Motif
Pfam: LSM SM-ATX VWA_3_C CooT RimP_C
Other DBs
NCBI-GeneID: 96088646
NCBI-ProteinID: XP_069303926
LinkDB
Position
8:join(1124901..1124928,1124977..1125072,1125125..1125152,1125215..1125278,1125329..1125373)
AA seq 86 aa
MSLENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEIDPAEGNVQL
PKILLNGNNICMMVPGGDGQTVLEDE
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtcgctcgagaacctccttccgctagaactcatcgacaaatgcgtgggctcgcagatt
tgggtcattatgaacggtgggaaagaattcactgggaagctggttggtttcgatgactac
gtcaacatggtgttggagaacgtgacggaaattgacccggcagagggaaacgtccagctg
cccaaaatcctactcaacggcaacaacatttgcatgatggtgcccggaggagatgggcag
actgttctggaggacgagtag

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