Alternaria dauci: 96088778
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Entry
96088778 CDS
T10615
Symbol
ACET3X_008456
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
adac Alternaria dauci
Pathway
adac03013
Nucleocytoplasmic transport
adac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
96088778 (ACET3X_008456)
09122 Translation
03013 Nucleocytoplasmic transport
96088778 (ACET3X_008456)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adac03019
]
96088778 (ACET3X_008456)
03041 Spliceosome [BR:
adac03041
]
96088778 (ACET3X_008456)
Messenger RNA biogenesis [BR:
adac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
96088778 (ACET3X_008456)
Spliceosome [BR:
adac03041
]
Complex C
Other components
EJC/TREX
96088778 (ACET3X_008456)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
96088778 (ACET3X_008456)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
96088778
NCBI-ProteinID:
XP_069304058
UniProt:
A0ABR3UCW4
LinkDB
All DBs
Position
8:join(1530797..1535440,1535492..1535628,1535686..1535698,1535761..1535904)
Genome browser
AA seq
1645 aa
AA seq
DB search
MPPPPKRKRPERTYSQDDDRSGRPSPHRPQHLGLAHNQQQQANSPRGGGNSGGGGGRRHS
RNNGRGGSSVPQSPNNVSSHASPTAMSPPANTFPLTRPSQATPSTPAPAPAPVPSQPSTP
SAPREVPESNEYLTPDRVTHWNGQARDAVVKAAVAAQGAGDALTLSVIFHEIIEASMDQL
LDAGELGSMVRDITSAPADDQVDPVSTFLDTLSSLTQDEGKQALVRQMLVATDIDVSRMR
AELENDLLKSLGLVRDSFSKMAVRKATHALYRQSNYNLLREETEGYSKLMTEYFTTVNSE
PPSQEVVGETWQRVNALIGAFDLDIGRVLDVTLDVFANLLVKHGRFFVKMLRSSAWWPEL
RGFDNIKWEEPEVPTLPLWARPDAKQWYYTDEEKDEQLRLRESRDCKFWQRVGELGDRAG
IQAFFELGGRRITANNRQPDQTLPAEGAPLSKQQAARKWADEWMEQTKTLPPSGNDIAAQ
LLGFKLQFYASDVRDATDELPDNLMYLIALLIKIGFISILDLYPHLYPLEPDMDAHKEKL
LKAKKEKEESERGAVVNALTMAGALPDETPGPPAVSRLRDADSRSKSDTGRTTPVKSDEP
VDKKKALPEPKDQKFTLLKSLLCIGALPEALFILGRHPWFLDVYPELLDLIFRLAHHSLS
KVYQETKPPSVEKPIISTKGGNNRGLMRPSDYVPRRTLRWAKPDRKDQDGGTDYKFYWED
WVDNVPVCQEVDDVIKLCTSLLGLVGPECGRDSVLLTKIIRIGKKNLVDDPSESNRKRWV
NFSATFIAPAITFTGRNPGVINEAWDLFKHFDTATRYTIYQQWFNGMLKPAIKTAFNQVE
IETRKTLSRISATNTKEYGRKIAKISYASPGIVFRTTVKQLVNYPNMITALVECSRYLTL
LGYDVLTWTLVTYLLNPDKGSQQDDGMLSAPWLKNIATFVGKAYARYHLMDPVPVLQLTT
HQLLTAEGELYMLDVLEQMVKSMGGISVSGSVSESVTLALCAGPALRTFTLQYRLADNRA
HATSSARRLVRCLKETGLGPQILIALAQHVEAYVHRDDQLEVPDKPVLFNVDKLRSVMLQ
YLELLRTFLSVDDFDALFPSLVEMIADYHVEPDVAFTIARASTTAKANAFRAGQRSKLLS
DTQTNDDIAMGGVEESPAVDGAQADATSAEASKAKEDVEMKDSASATAAPSDKPSLPDVP
NSEVEILANQLKQQLPETFGNHPCVSYYVAFWQLSLIDVVVDVDGINQQYKDSIETLERQ
LPAPVPERRGYRPNVPKADSESVKNLKENIARIKEEQQVVVENHTVTQQSLKVELRRWFE
GVPMMGPQCDVLHNALLQDCFIPRSRISQEDAQYAFSMLIFMHSSGVPGFRMSRLLDMLF
NANRLTSIISMYTEAESSSFGRFLGGILRELQVWQENKDDAFVKNAHGLEKNLPGFGRSY
DGDRNATSFFTYDQFCMVLFKWHKALAAALKTCLESGNYMQMRNSINVLHALGTNFPKVA
SMGTELKEMVMRLKEGEKRQDLMRSLESVLGPILKGEKFWQEDHVFRNVPAPTPVPGSTT
NGSDKAATENGKTPQPQDTKLDAAAPAFKPKSETNGTPGQGTVQANAKNIRQQAFYPIAT
RDWLWQTYTEARSSDASFICATATG
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccccacccaagcgaaaacgacccgagcgcacctactcacaggacgacgaccgc
agtggacgcccgtcgccgcaccgcccccagcacctcgggctcgcgcataaccagcagcag
caggccaacagcccgcgcggaggcggcaacagcggcggtggaggcggcaggcggcacagc
agaaacaatggacgcgggggctccagcgtgccccagagccccaacaatgtctcgtcacac
gcatcgccgaccgccatgtctccgcctgcaaacaccttcccgttgactcgcccgtctcaa
gccacaccctccaccccggccccagcgcccgcgcccgtcccctcacagccttcgacgcct
tctgcgccgcgcgaggtccccgagagcaacgagtatctgacgccagaccgcgtcactcac
tggaatggccaagcacgcgacgccgtggtcaaggccgctgtggctgctcaaggcgcaggc
gacgccctcaccctctcggtcatattccacgaaatcatcgaggcgtccatggaccagctg
ctagacgccggcgagctggggtcaatggtgcgcgacatcacatctgccccggccgacgac
caggtcgacccagtatcaacgttcctcgacacgctgagttcgctcacgcaagatgagggc
aaacaggcgctggtacggcagatgctcgtcgcgactgacatcgacgtgtcgcgcatgcga
gccgaactagaaaacgacctcttgaagtccttgggcctcgtccgcgacagcttttccaaa
atggccgttcgcaaagccacgcacgccctgtaccgccagtccaactacaacctgctgcgc
gaagagaccgagggctactccaagctcatgaccgagtacttcaccaccgtcaacagcgaa
ccgccctcgcaggaagtcgtcggcgagacctggcagcgagtaaacgctctcattggcgca
ttcgatctggacattggcagagttctcgacgtgacgctggacgtgtttgctaacctcctc
gtcaagcacggaaggttctttgtcaagatgctccggtcaagcgcatggtggcccgagcta
cgcggctttgataacatcaaatgggaggaacccgaagtaccgacactgcccttgtgggca
cgacccgatgcgaagcagtggtattacaccgacgaagagaaggacgaacagctgcggctg
cgagagtcgcgcgattgcaaattctggcagcgagtcggtgagttgggcgaccgggcaggc
atccaggccttctttgaacttggaggccgtcgtatcactgcgaacaaccggcaaccagac
cagaccttacccgccgaaggcgcgccgctatcgaagcaacaggcagctcggaaatgggcc
gacgagtggatggagcagaccaagacactccctccgtcaggaaacgacatcgccgcccaa
ctgcttggcttcaagctccagttctacgcgtcagatgtccgcgacgccaccgacgaactt
cccgacaatctcatgtacctgattgcgctgttgatcaagattggcttcatctctatccta
gatctctatcctcatctatacccactagagccagacatggacgcacacaaagaaaaactc
ctcaaggccaagaaggagaaggaggaaagcgaacgaggcgcagttgtcaacgcactgacc
atggctggcgcactacccgacgagactcctggtccgccagctgtttctcgtctgcgggac
gccgactccagatccaagtccgacactggacggaccacgcctgtcaagtctgatgagccc
gtggacaagaagaaagcgttacccgagcccaaggaccagaagttcacgctgctgaagagt
ctgctgtgcatcggcgcgcttccagaagctctattcatccttgggcgacatccctggttt
ctggacgtgtatcccgagctgctggacctcatcttccgcctggcacatcactctctgagc
aaggtttaccaggaaaccaaaccgccctcggttgaaaagcccatcatttccaccaagggc
ggtaacaatcggggtcttatgaggcctagtgattacgtccctcgacgaaccctccgatgg
gccaagccggaccggaaagatcaagacggaggaaccgactacaagttttattgggaagac
tgggtcgacaacgtccccgtatgtcaagaggtggacgatgtcattaagctttgcaccagc
ctcctaggcttggtaggaccagagtgtggcagggatagtgttctcctaaccaagatcata
cgtattggcaagaagaacctggtggacgatccttccgagtcgaaccgaaagcgatgggtc
aacttctcagcaacttttattgcacctgcgattactttcacgggcagaaatccaggagtc
atcaacgaggcatgggatctgttcaaacatttcgacacagccacgcgatacaccatctat
cagcagtggttcaacggaatgctcaagccggcgatcaagacggctttcaatcaggtcgag
attgaaaccaggaagactctgagtcgcatctccgctaccaacactaaagaatatggccgc
aaaatcgccaagatctcgtatgctagcccaggaatcgtcttccgaacaacagtcaagcag
ttggtgaactaccccaacatgatcactgccttggtcgagtgtagtcgatatcttacctta
cttgggtatgacgtcctgacctggaccctggttacataccttctcaaccccgacaaagga
tcacagcaggacgacggtatgctgtctgcgccgtggctcaagaatattgcaacctttgtc
ggcaaagcttacgcaagatatcacttgatggatcctgttcccgttttacagctcaccaca
caccaactcttgactgctgaaggcgagttgtacatgttggacgttcttgagcaaatggtc
aagtctatgggtggcatcagcgtcagtggatctgtgtcagagtcggtgactctggcgctt
tgtgcaggacctgcgcttcgtacgttcactctgcaatatcgtctagcggacaaccgtgca
cacgccacttcttcagcaagacgtctagtcaggtgtctaaaggaaacgggactgggtcca
caaatcctcatcgcactggcgcagcacgtggaagcctatgttcaccgcgacgaccagctg
gaagtacctgataagcctgtacttttcaacgtcgataagctgcgctccgtcatgcttcaa
tacctggagctccttcgcacatttctctccgtggatgactttgacgctctgttcccttca
ctggtagagatgatcgcggattaccacgttgagccggatgttgcttttaccattgctcgt
gcaagcacaacagccaaggccaatgctttccgagctgggcaacgctcaaagttgctctcc
gatacgcagacaaatgacgacattgccatgggtggcgtggaagagtcgccagctgtggat
ggggctcaagctgatgccacatccgctgaagcctcgaaagcgaaggaagatgtggaaatg
aaagactcggcatccgcgactgcagctccttcggacaagccttccttgcctgatgtgcca
aattcagaggtggaaatcctcgcgaaccaactgaagcagcagctacccgagacctttggc
aatcatccttgtgtgtcctattatgttgcattctggcagttgtccctgatagacgttgtc
gtcgacgtcgatggcatcaatcaacaatacaaggattccatagaaaccctggagcgacaa
ctgcccgctcctgtgcccgaacgccgtggttatcgacccaacgtacccaaagctgattca
gaatcggtcaagaatctcaaggagaacatagccaggatcaaggaagaacaacaggtcgtt
gtggagaaccatactgtgacgcagcagagtctgaaggtcgaattgcgtcgatggttcgaa
ggcgttccgatgatggggccacagtgcgacgtcttgcacaacgctttgctccaagactgc
ttcattcctcgcagtcgcatatctcaagaagacgcccaatatgcgttctccatgctcata
ttcatgcacagctcaggcgtgccagggttccgcatgagcagactattggacatgctcttt
aatgcgaacaggcttacatcaatcatcagcatgtatactgaagcagaatcctcgtctttc
ggcaggttcctcggtggcatcttgcgtgagctgcaagtctggcaggagaacaaggatgat
gcctttgtcaagaatgcccatggtttggagaagaatcttcctggctttggcaggagctac
gacggggatcggaatgcgaccagcttcttcacttacgaccagttttgcatggtcttgttt
aagtggcacaaggcacttgcagctgcactcaagacatgcctggagagcggcaactacatg
caaatgcgtaactcgatcaacgtcctccacgcgctgggcaccaacttccctaaagtggcg
agtatgggcacagagctgaaggagatggtgatgcgtctgaaggaaggagagaagagacaa
gatcttatgagatcgctggaatctgttcttggacccattctcaaaggagagaagttctgg
caggaggaccatgttttccgcaacgtaccggcacctactcctgtgccagggagcacgaca
aacggaagcgacaaagctgctacggagaatggtaagactccacagccacaagatacgaag
ctcgacgcggctgcacctgctttcaaaccgaagtccgaaacaaacggtacaccaggacaa
ggaaccgttcaagccaacgccaaaaacatccgacagcaggccttctaccccatcgcaaca
agagactggctctggcagacctacaccgaagccaggtcctccgatgcatcattcatctgt
gccactgcgaccggataa
DBGET
integrated database retrieval system
