Alternaria dauci: 96089661
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Entry
96089661 CDS
T10615
Symbol
ACET3X_009339
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
adac Alternaria dauci
Pathway
adac03013
Nucleocytoplasmic transport
adac03015
mRNA surveillance pathway
adac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
96089661 (ACET3X_009339)
09122 Translation
03013 Nucleocytoplasmic transport
96089661 (ACET3X_009339)
03015 mRNA surveillance pathway
96089661 (ACET3X_009339)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adac03019
]
96089661 (ACET3X_009339)
03041 Spliceosome [BR:
adac03041
]
96089661 (ACET3X_009339)
Enzymes [BR:
adac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
96089661 (ACET3X_009339)
Messenger RNA biogenesis [BR:
adac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
96089661 (ACET3X_009339)
Spliceosome [BR:
adac03041
]
Complex C
Other components
EJC/TREX
96089661 (ACET3X_009339)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
96089661 (ACET3X_009339)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
96089661
NCBI-ProteinID:
XP_069303416
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All DBs
Position
9:complement(join(1981570..1981876,1981928..1982288,1982337..1982753,1983179..1983410))
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AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQTTDAPANGSAAASKGGLTAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GVATILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLGNKDTHPHII
VGTPGRINALVRDRHLRLASLKHFVLDECDKMLDQPDMRNDVQAIFRATPQHKQVMMFSA
TLSKEVRIVCKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEKEKNRKLNDLLDSLEFNQ
VIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPDDEAVLKSIEERFQV
ELPEFPENGVDSGTYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagacctcattgactactcggacgaggagatccagacgactgatgcg
cccgccaacggcagcgcagctgcaagcaagggcggcctcaccgccggtgacgctgccggc
gacaagaagggcagctacgtcggcatccactcaaccggtttccgcgacttcttgctcaag
gacgagctcgtacgagcaatcacggactgtggcttcgaacatccttccgaggtccagcaa
gtcaccattccccaggccattctaggaaacgatgtcctctgccaggccaagtccggtctc
ggaaagaccgccgtcttcgttctcgcaactctccagcagatggacgagaagcctgagcct
ggtgtcgccactatcctggtcatgtgccacactcgcgagttggcctaccagatccgcaac
gagtacaaccgtttcgccaagttcctgccagacgtcaaggtcggtgttttctacggcgga
actcccgtccagaaggatatcgagctcctcggcaacaaggacactcaccctcacatcatt
gtcggtacccccggtcgtatcaacgcccttgtacgcgacaggcatctccgccttgccagc
ctgaagcacttcgtccttgacgagtgcgacaagatgttggaccagcccgacatgcgcaac
gacgtccaggccatcttccgtgctactccccagcacaagcaggtcatgatgttttcagcc
acgctcagcaaggaggtccgcattgtctgcaagaagttcatgcagaacccgctcgagatc
tacgtcgacgacgagaagaagttgacacttcacggtctccagcaatactatatgaagctc
gacgagaaggagaagaaccgcaagctcaacgacctgctcgacagcttggaattcaaccag
gtcatcatcttcgtccgttcgactcttcgctgctccgagcttgacaagcttcttcgcgag
tgcaacttccccagcactgctgttcactccggaatcagccaagaagagcgtatcaagcgc
tacaaggagttcaaggagttccagactcgtatctgtgtctccactgacatcttcggtcgt
ggtattgatgtcgagcgtatcaacgtcgccatcaactacgacatgcccgacaaggctgac
gcctaccttcaccgtgttggtcgtgccggtcgtttcggaaccaagggtctctccatctcg
tttgtcagcagccccgatgacgaggcggtcctcaaatcaatcgaggagcgtttccaggtc
gagctcccagagttcccagagaacggtgtcgactccggcacctacatggataactaa
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