Alicyclobacillus dauci: NZD86_02260
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Entry
NZD86_02260 CDS
T08679
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
adau
Alicyclobacillus dauci
Pathway
adau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NZD86_02260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adau03021
]
NZD86_02260 (rpoC)
03400 DNA repair and recombination proteins [BR:
adau03400
]
NZD86_02260 (rpoC)
Enzymes [BR:
adau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NZD86_02260 (rpoC)
Transcription machinery [BR:
adau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NZD86_02260 (rpoC)
DNA repair and recombination proteins [BR:
adau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NZD86_02260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
SHOCT
Motif
Other DBs
NCBI-ProteinID:
WAH37385
UniProt:
A0ABY6Z5T9
LinkDB
All DBs
Position
452112..455762
Genome browser
AA seq
1216 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTRDWEC
HCGKYKRIRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFQAGMGAEAIRSLLH
EIDLDKEVETLREELRSAQGQRRNRAIKRLEVVEAFRLSGNKPSWMILEALPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPKE
MALELFKPFVMKELVSRGLAHNIKSAKRKVERVSPEVWDVVEDVIKQHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL
NPKDGKPVVTPTQDMVLGPYYLTIEKPDAPGEGGVYSSMSEVEYARHQGLLTLQSRIAVP
ASILGKTSLTEQQQKALLITTPGKLIFNSIFPADFPYLNSAVKSNLLSGAPDETFIFEKG
TNVKEAIVNRPIPKPVIKKDLGNILGECFRRYGTTQTSEILDRIKRLGFNYSTRAGITIA
VSDIIVPEEKHRIVEEAEAKEHKLKQQYRRGLITEEEQYITFSQIWSEAKESISTTLMDS
MDEFNPIYMMATSGARGSNSQITQLAGMRGLMANPSGEIIQLAIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDTIVREVDCGTDKGLRVVQIRDGREIIEEL
GDRLEGRVAFQDIYHPETGEKIVGKNEMIDEEMTDRIIKAGIKEVYIRSVLTCRTKHGVC
INCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQAVIAEFEGTITDIREGKDKREVELTGESETKTYQIPYGSRIRVAIDQQLEA
GEELTEGSVDPKEMLRVKGLQGVQNYLLREVQRVYRLQGVDINDKHVEVMVRQMLRKVRI
LDAGDTDLLPGIYVDLFDYEQANKVALLSGREPAVARPALLGITKASLETDSFLSAASFQ
ETTRVLTEAAIKGKVDRLLGLKENVIIGKLIPAGTGMSRYRNLGLAGDEENGEKDPSTLG
DEGVHELEAEPAQTVE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttgctagacgtgaacaactttgagttcatgaaaatcgggttggcatcaccagaaaagatt
cggtcttggtcacacggtgaagtgaaaaagccggagacaatcaactaccggacgctgcgt
cctgaaaaggaaggccttttctgcgagaagatttttggtccaacccgtgactgggaatgt
cattgcggcaagtataaacgcattcgctataaaggtgtcgtttgtgaccgatgcggcgtg
gaagtcacacgggcgaaagttcgtcgtgaacgcatgggacacatcgagttggcagcaccg
gtttctcatatctggtacttcaaaggcattccgagccgtatgggtctcgtcttggatatg
tccccgcgtgcattggaagaagtcatctatttcgcttcctatgtcgtgacggaccctggc
gatacgccgctggaaaagaagcagcttctaagcgagaaggagtaccgttcttatcgcgag
aagtacggctacgcgtttcaagctggcatgggtgcggaagccattcgttcactgcttcac
gagatcgatctcgacaaagaagtcgaaacgctgcgtgaagaattgcgatccgctcagggc
caacgccgcaaccgggcgattaaacgtttggaggttgtcgaggcgtttcgcctgtctggc
aataaaccaagctggatgattctcgaagcgttgccggtcattccgccggatctccgccca
atggttcagttggacggtgggcgcttcgctacatccgacttgaacgatctctatcgtcgc
gtcatcaaccggaacaatcgtctgaagcgcctgctcgatctcggcgcaccagatattatc
gtgcaaaacgagaaacgcatgctccaagaagcagtcgacgcgctcatcgacaacggtcgc
cgtggtcgcccagtcacgggccctggaaaccgtccgttgaagagtctgtcgcacatgttg
aaaggtaagcagggtcgtttccgtcagaacctcttgggtaagcgcgttgactactccggc
cgttccgttatcgttgtcggtccggaactgcgcatgtaccagtgcggtctgccgaaggaa
atggcactggaactgttcaagccgttcgtcatgaaggaattggtctctcgtgggcttgcg
cacaacatcaagagtgcaaagcgtaaagttgaacgcgtatcgcctgaggtttgggacgtt
gtggaagacgtcatcaaacagcatccggttctcttgaaccgtgcaccaacgttgcaccgt
ctgggtatccaggcgtttgaaccgacgctggtcgaagggcgcgccatcaaacttcacccg
ctcgtgtgtacagcgtataacgctgacttcgacggtgaccagatggctgtccacgtaccg
ttgtctgcagaggcccaggcagaagcccgcttgctgatgctcgcagcacacaacatcttg
aacccgaaggacggcaagccggtcgttacaccgacgcaggatatggtcctcggaccgtac
tacctgaccatcgagaagccagatgctcctggtgaaggcggcgtctactcttccatgtcc
gaggttgaatatgcacgccatcaaggcctattgacattgcagtctcgcattgctgtacca
gcttcaattcttggcaagaccagcttgacggagcaacaacaaaaggcgcttctcattacg
acgcctggtaagctgattttcaacagtatattcccagctgacttcccgtatttgaactca
gctgtgaaatccaatctgttgtccggtgcacctgatgaaacattcatcttcgaaaagggt
accaatgtcaaagaagcgatagtgaaccgtccaattccaaagccggttatcaagaaggac
ttgggtaatatcttgggcgagtgtttccgccggtatgggacgactcaaacgtctgagatt
ctcgaccggatcaagcggcttggatttaactactcgacccgcgcaggtatcaccatcgct
gtgagtgatattattgttccggaagagaagcatcgcatcgttgaggaagccgaagcgaaa
gagcacaagctcaagcagcaataccgccggggcctcattacggaagaagagcagtacatc
acgttcagtcaaatatggtcggaagcaaaagagtccatttccacaacattgatggatagt
atggatgaatttaatccgatttatatgatggcaacttccggtgcccgtggtagtaactcg
cagatcacgcagctggccggtatgcgcggactcatggcgaacccatctggtgaaattatt
cagttggccattaagtccaatttccgcgagggcctgacggttctggagtacttcatctct
acacacggtgctcgtaaaggtttggccgatacggctctccgtacggctgactcgggttac
ctcacgaggcgtctcgtcgacgtcgcacaggacaccatcgtgcgcgaagtcgattgtgga
accgacaagggcttgcgcgtcgtgcaaatccgcgatggccgcgagatcattgaagaactc
ggcgatcgtctggaaggccgcgtagcgttccaggacatttatcatccggagacgggtgaa
aagatcgttggcaagaacgagatgatcgatgaggaaatgacggatcggattattaaagcc
ggcattaaagaggtgtacatccgctctgttctcacatgccgtacgaaacacggtgtctgt
atcaattgttacgggcgcaatttggctaccgggaaaatggtcgagatcggtgaggccgtc
ggcatcattgcggcacagtccatcggtgaaccaggtacccagttgaccatgcgtacgttc
cacacgggtggtgtcgctggtgatgatatcacccagggtcttccgcgtattcaggaattg
ttcgaggcgcgcaatccgaaagggcaagcggtcatcgctgaattcgaagggaccatcacg
gatattcgcgagggcaaggataagcgcgaagtcgagttgacaggcgagagcgagacgaaa
acgtaccaaattccgtacggttctcgaatccgtgtcgcgatcgatcaacagctcgaagcc
ggtgaggaactgacggaaggctccgtagacccgaaggaaatgcttcgtgtcaagggtctc
cagggtgtccaaaactacttgcttcgtgaagttcagcgcgtataccgcctgcagggcgtg
gatatcaacgacaagcacgtcgaggtgatggttcgtcagatgctgcgcaaggtgcgtatc
ctcgacgcgggtgacacggacctcctgccgggaatatacgtcgatctcttcgactacgag
caggccaacaaagtggccttgctatccggtcgtgaaccagccgtagctcgcccggcgttg
cttggtattacgaaggcatctctggaaacagactccttcctgtctgcagcttccttccag
gaaacgacacgtgtcttgacggaagcggcaatcaagggtaaggtcgacaggttgcttggc
ttgaaagagaacgtcattattggtaagttgatccccgcgggcacgggtatgtcccgctat
cgcaacctcggtttagctggggatgaggaaaatggggagaaggacccttcgactctgggt
gacgaaggtgtccatgagttagaggccgagccggcgcagacggttgaataa
DBGET
integrated database retrieval system
