Alicyclobacillus dauci: NZD86_17945
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Entry
NZD86_17945 CDS
T08679
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
adau
Alicyclobacillus dauci
Pathway
adau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NZD86_17945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adau03019
]
NZD86_17945
03009 Ribosome biogenesis [BR:
adau03009
]
NZD86_17945
Enzymes [BR:
adau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NZD86_17945
Messenger RNA biogenesis [BR:
adau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NZD86_17945
Ribosome biogenesis [BR:
adau03009
]
Prokaryotic type
rRNA helicases
NZD86_17945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WAH36111
LinkDB
All DBs
Position
complement(3534130..3535563)
Genome browser
AA seq
477 aa
AA seq
DB search
MANFSELNLSEPVLKSLSSMGFESATDIQSQAIPVALSGQDVIGQAQTGTGKTVAFGIPI
VETVAREDTNIQAVILTPTRELCIQVAEEISKVGGFKGIRTLAIYGGQDIGRQIRSLRNH
PQVIVATPGRLMDHMNRRTVKLDHIRIAVLDEADEMLDMGFVEDIETILAACPSERQTML
FSATMKPGVKSLARKFMRDFVLVSVKATEVTVPTIEQDYYEVPEPQKLDVLTRLLDIQNP
ELAIVFGRTKRRVDELSNALQTRGYMADGLHGDLSQKQRDTVMGKFREGGLEVLVATDVA
ARGLDVSGVTHVYNFDIPQDIDSYVHRIGRTGRAGKSGIASTFVTPREIDHLHQIERMTK
HKINRRPLPTFTEAKVSKQRIAMEQLLDACEDENLSGFKSLAEEVLEGHDSLTVVSAAIK
LLTKGTNEVPIKLTAEQPIRIRSPKNRERGGYRGDRHREGYRHPRGGHVRGRSRHQG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttttcagaactaaatttgagtgaacctgttctcaagtccttatcgagtatg
ggatttgagtcagctactgatattcaatcgcaagcgattccagttgctttgtcgggtcag
gacgtgatcggacaggctcagacgggcacgggtaaaacggttgcgttcggcatcccgata
gttgaaacagtggcgcgcgaagatacgaacattcaagcagtcattcttacgccgacccgc
gagttgtgtattcaagttgccgaggaaatcagcaaagtgggcggttttaagggtattcgg
acgttagctatttatggtggtcaggacattggacgccagattcgtagtttacggaatcat
ccgcaggtcatcgttgcgactccgggtcgcctcatggaccatatgaatcgcagaacggta
aaactcgatcacatccgcatcgctgtacttgacgaagcggatgaaatgttggatatggga
ttcgtagaagatatcgagacgattctcgcagcgtgcccgtcagaacggcagactatgttg
ttttccgccacgatgaagcctggtgtcaagagtttggctcgcaagttcatgcgggacttt
gtactcgtttccgtcaaggcgacggaagtgacggtgccgactattgaacaggactactac
gaggttccggagccgcagaaactggatgtgctaacgcgtctgctcgatattcaaaatccg
gagcttgccattgtcttcggtcgaacgaagcggcgtgtcgatgagttgtccaatgcgctg
caaactcgcggctacatggcggatggactccatggggacctgagtcaaaagcagcgcgac
accgtgatggggaaattccgcgagggagggctcgaagtcctcgttgccaccgacgttgca
gcccgtgggttggacgtgtctggtgtgactcatgtgtacaacttcgatattccgcaggac
attgacagttacgttcatcgtatcggtcggacgggacgtgcgggaaagagcggtatcgcg
tcgacgtttgtgacgccgcgcgagatcgatcacctacatcaaatcgagcgaatgaccaag
cacaaaataaatcgtcgtccgttgccgacgtttaccgaggcgaaagtcagcaagcagcga
attgcaatggaacagctgctcgatgcatgtgaagatgagaatttgagcggattcaagagc
ctcgcagaggaagtgcttgaaggacatgattcactcactgtcgtttctgcagcaatcaag
ttgttgacgaagggaaccaacgaggttcccattaagctcacggcggaacagccgattcgg
attcggagtccgaaaaatcgcgagcgcggtggttatcgaggtgacagacatcgcgagggt
taccggcatcccagaggcgggcatgttcgaggccgcagtcgccaccaagggtaa
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