Alicyclobacillus dauci: NZD86_19480
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Entry
NZD86_19480 CDS
T08679
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
adau
Alicyclobacillus dauci
Pathway
adau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NZD86_19480 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adau03019
]
NZD86_19480 (rnr)
03016 Transfer RNA biogenesis [BR:
adau03016
]
NZD86_19480 (rnr)
Enzymes [BR:
adau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NZD86_19480 (rnr)
Messenger RNA biogenesis [BR:
adau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NZD86_19480 (rnr)
Transfer RNA biogenesis [BR:
adau03016
]
Prokaryotic type
tRNA degradation factors
NZD86_19480 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
DUF4364
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WAH39282
UniProt:
A0ABY6Z8S0
LinkDB
All DBs
Position
complement(3868993..3872100)
Genome browser
AA seq
1035 aa
AA seq
DB search
MLRDKILEYMESDIYKPLTAQELSQVFEQESAAEFRDLVKLLNELEDSGFVVRTKNNRYG
LPEQMNLVSGKLQMKARGFGFVIPEKTGETDVYIPATEMNGAMSGDKVLARVVESGGKAG
PHREGVIVRVVERANERIVGKITIYANHAFVQPIDKRFQQDIFIPKEAVEGAHDGYIVVV
ELTSFPSATHGPVGKIVEVLGHPDEPGVDILSVIRKYGLPESFPEKVLQAAEAISIEIDP
DEMEKRRDLRDEVIVTIDSESAKDLDDAVHVKQLENGNYLLGVHIADVGYYVKEGGVLDQ
EAFRRGTSVYLVDRVIPMLPPRLSNNICSLNPQVDRLTLSCEMEIDSEGNVVNHDVFPSV
IKTTERMTYNNVRKIVADKDEEVMARYEALVPMFQRMEELALILRAKRMRRGAVDFDFDE
IYVQVNDLGEPVDIIPRQRSIAERIIEEFMLAANETVAEHFYWLGVPFVYRVHDEPDSDK
MIDLNAFLHNFGHHLKGVGGSKIHPRALQEVLSAVEGTREARMISTVMLRSMQQAKYKPE
STGHFGLAAEYYTHFTSPIRRYPDLTIHRIMREVLSGPLSPEREAKLRDFVEEASRQSSE
RERLAQDAEREVDQLKMVEYMQAHIGEEFDGIISSVTQFGIFIQLDNGVEGLIHISALND
DYYVFNDKQMALIGERNRRVFRMGDPVRIEVMRASKEDLQIDFALVEHYREGTYVGGHGS
EAIVYDEDLSPKERRRSEERRESLSSAPPKGKAHSGGHDGRSRRDRTAGRTIEGGYSRDG
RARSAELPVDMPYDEWDEEFPDPRELREQAQAERAAREGGRERGSRGRDGASGRNRDRDG
TGEHRPSRERDSRRTTGGYRTWPSRDDSRRTGTGRAGGRGGDRDRGRARTGEYGGRGRDD
TGRYRTGDSVRGSRRDDQGSERRSRSDWSNDGEQFGSNGHRRSEGAYGSGGPREDGRRDD
ARRGGGRREFGRREGGREGGREGGRDKRDGFGGNFTSGDGGKPRKRHKGGVKFGAKAAAR
KAGGRGGAGSRRKGR
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgggataaaatcttggaatacatggaaagcgacatttataaaccgttgacggca
caagagttgagccaggtttttgaacaggagtctgcggctgaatttcgcgatctcgtcaag
ctcctcaacgaactcgaagacagcgggttcgtcgtgcgcacgaaaaacaaccgttacggt
ctcccagagcagatgaacctcgtcagcgggaagctgcaaatgaaggcccgcggcttcggc
ttcgtcatccccgagaagacgggagagacagacgtctacatccccgcaacggaaatgaac
ggtgccatgagcggtgacaaagttctggcacgtgtcgtcgagagcgggggtaaggctggc
ccgcaccgtgagggagtcatcgtgcgtgtcgttgaacgggcaaacgagcgcatcgtcggt
aaaatcaccatttatgccaaccacgcctttgttcaaccaatcgataaacgcttccaacaa
gacatatttatccccaaggaagccgtcgaaggcgcccacgacggatacattgttgtagta
gagctcacctcgttcccatctgccacccacggccccgtgggaaagattgtggaagtcctc
ggccatccggacgaaccaggcgtcgacatcctgtctgtcattcgcaagtacggcctgccg
gaaagcttcccggaaaaggtattgcaggcggctgaggcgatttctatcgagatcgatccg
gatgaaatggagaagcgccgcgatcttcgcgacgaagtcatcgtgaccatcgacagcgaa
agtgcgaaggacttggacgacgccgttcacgtcaagcagttggagaacggcaactatctc
cttggcgtccacatcgcggacgtgggctattacgtcaaggaaggtggcgtgctggaccaa
gaggcgtttcgtcgcgggacgagcgtctacctggtcgatcgcgtcattcccatgctccca
ccgcgcctgtcgaacaacatttgctccctcaacccgcaggtggacaggctgacgctgtcc
tgcgagatggagatcgacagcgaaggcaacgtagtcaatcacgacgtttttcccagcgtc
atcaaaacgacggagcgcatgacctacaacaacgtccggaaaattgtggccgacaaagac
gaagaagtaatggcccgttacgaggcactcgtgcccatgttccagcggatggaagaactt
gcgctcattcttcgagccaaacgcatgcgccgcggtgcagtcgactttgacttcgatgag
atatacgtccaggtcaacgatctcggcgaacccgtcgacatcatccctcgccagcgctcc
atcgcagaacggatcatcgaggagttcatgctcgccgccaacgaaactgtcgccgagcac
ttctactggctgggcgtcccattcgtctatcgcgtgcacgacgagccggactccgacaaa
atgatcgatctcaacgcttttctccacaacttcgggcaccacctgaaaggcgtcggcggc
agcaaaatccatccgcgtgcccttcaggaagtgcttagtgcagtggagggaacacgcgaa
gcccgcatgatctcaaccgtcatgctccggtcaatgcagcaggcgaagtacaagccggaa
tccaccggtcacttcggcttggccgccgagtactatacacacttcacgtcgcccatcagg
cgttaccctgacttgaccattcaccgcatcatgcgtgaggtgttgtccgggccgctgtcc
cccgagcgtgaggcgaaactccgcgacttcgtcgaggaagccagccgtcagtccagcgaa
cgtgaacgcttagcccaagacgcggaacgcgaagtcgatcaactgaagatggtcgagtac
atgcaagcccacatcggcgaagaattcgacggcatcatctccagcgttacacagttcggc
atcttcatccaactggacaacggtgtggagggtctcatccacatcagcgccttgaatgac
gattattatgtcttcaacgacaagcaaatggcgctcatcggcgaacgcaatcgccgcgtc
ttccgtatgggcgatcccgtccgcatcgaagtcatgcgcgccagcaaagaagacttacaa
atcgacttcgccctcgtcgagcactatcgtgaggggacatatgtcggcggccatggttcc
gaagccattgtctacgacgaggacctatcacctaaagagcgccgccgcagcgaagagcga
cgcgagtctctctccagtgctccgccgaaaggtaaggctcacagtggcggccacgatgga
cgatcccgccgggatcgcacagccggccgcaccatcgaaggcggatatagccgcgacggc
cgagcgcgcagtgcggagttgcccgtggacatgccgtacgatgagtgggacgaggaattc
ccagacccgcgcgagctgcgtgaacaagcgcaagcggaacgggcagcccgtgaaggcggt
cgtgagcgcggcagccgtgggcgtgatggggcttcgggccgcaatcgtgatcgtgatggt
accggggaacacaggccttctcgggagcgtgattcacgcaggacgactggtggctatcgc
acatggccgagccgtgatgacagcaggcgaaccggtactggcagagctggcggtcgcggc
ggggaccgtgacaggggccgcgcgcgtacgggcgaatatggcggccgtgggcgtgatgat
accgggcgctaccgtacaggcgattctgtgcgcggcagtcgtcgcgatgaccaagggagt
gagcgccggagccgatcagactggtcgaatgacggtgagcagtttggcagcaatggtcat
cgccgaagtgagggtgcctatgggagcggcggaccacgtgaggacggtcgacgcgacgat
gcccgccggggtggcggtcgccgtgagtttggacgtcgtgaaggcggtcgtgaaggtggt
cgtgaaggtggtcgtgacaagcgagacggcttcggcggaaactttacgtcaggcgacggt
ggcaagcctcgcaagcgacacaaaggcggcgtgaaattcggtgcgaaagccgcggcacgg
aaagcaggcggtcgcggtggcgccgggagtaggcgcaagggtcgctga
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