Aeromicrobium duanguangcaii: NP095_08625
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Entry
NP095_08625 CDS
T09547
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
adb
Aeromicrobium duanguangcaii
Brite
KEGG Orthology (KO) [BR:
adb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adb03019
]
NP095_08625 (hrpA)
Enzymes [BR:
adb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NP095_08625 (hrpA)
Messenger RNA biogenesis [BR:
adb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NP095_08625 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_16
AAA_30
NACHT
T2SSE
SLFN-g3_helicase
PhoH
TsaE
Zeta_toxin
Ploopntkinase3
SRP54
Cas3-like_C_2
AAA_24
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
UUI67273
LinkDB
All DBs
Position
1736385..1739963
Genome browser
AA seq
1192 aa
AA seq
DB search
MKLEFDPALPITARHHEIRDALRDHQVVVVAGETGSGKTTQLPKIAAELGRTKIAHTQPR
RIAARSVAARIAQECDVELGAEVGYAVRFDDKSGPDTVVRLVTDGLLLTELQHDRRLERY
DTIIIDEAHERSLSIDFLLGYLRELLPRRPELKVVVTSATIDVERFAALFSTPERPVPII
EVSGRTYPVEVRYRPLDREDDVIDGIVSAIRELPRDGDVLVFLPGERDIRDTAEVLEGQS
LGDVVPLYGRLAAHEQQRVFQTGPRRRIVLATNVAETSITVPGIRYVVDPGLARISRFST
RLKVQRLPIERISQASAAQRAGRCGRVADGICIRLYDEEDFESRPEFTDPEIQRTNLASV
ILQMASLDLGDIRDFGFLDAPDHRAVADGLTLLRELDALAPGRDGSDRLTKLGRTMSRLP
LDPRHARMVLAADRLGVLPEVLVIVAGLSIQDVRERPLDKQQAADTQHARFRQPDSDFLS
LLKLWDYLQERRDELSHTKFRRMCHDEFLHYLRVREWADVNSQLRRTVRELGLKPGKVRK
EPDADAIHRALLHGLLSHVGLRDAETREYLGARGARFSIFPGSGLAKKPPRWIMAGELVE
TSRLFARDNARVDPAWVEKAAGHLLKHQYSEPRWSAKRGAAVATQRSTLYGLPVVVDRTV
MLAQHDAPLARELFIRHALVGGEWRTHHKFWLRNQDRLADIENLEERVRTRGIRVDDETL
VDFYDARIPADVVSVRHFDSWWKKQPDKHLLDFTDDLFRADVDADAFPTSWTSQSTDFDA
VYDVSYRFDPQAPDDGITITVPVDDLLTVDADEFAWGVPGRRLELVTELIRGLPKSERRR
FAPAAQSAERVLPGLDTSKDLRTELGRALDVDPSLIDLTSLPAHLRPTFRVVDGERELAS
GKDIDALRRELEPRLRRDLQQKAQSEERTGITDWDFGDLQRSITAGQVTGYPALVDEGKS
VALRVLRTQAEQQVAMVRGQARLIALSTGSPVGTVGRTLSLQDKLLLTTSPQGDAAAVIE
ESWLTALDHLVVQHGGPVWDEAAYRRLRDLVRADAVPLTERIVRQVISAMQALGDVNPGK
DEAGEDVRVQLSWLLHPGFIRDMGAEQIGRLQVYLRAAAKRLTSTKDPSEIWDLEARFHE
RTKDLRPWQRLTPPVRRVRWMLEELRVSVFAQELRAAGPISPQRVAKALAEL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgagttcgatcccgctctgccgatcactgcccgccaccacgagatccgcgac
gccctgcgcgatcaccaggtcgtggtcgtggccggcgagacgggctcgggcaagaccacg
cagctgcccaagatcgccgccgagctgggacgcaccaagatcgcccacacccagccgcgc
cgcatcgcggcccggtcggtcgccgcccgcatcgcgcaggagtgcgacgtggagctggga
gccgaggtcggctacgccgtccgcttcgacgacaagtccggccccgacaccgtcgtccgc
ctcgtcaccgacggtctgctgctgactgagctgcagcacgaccgccggctcgagcggtac
gacacgatcatcatcgacgaggcccacgagcgatcgctgtcgatcgacttcctgctgggc
tacctgcgcgagctgctcccccgccgtcccgagctcaaggtcgtcgtcacgtcggccacg
atcgacgtcgagcggttcgccgccctgttctcgacgcccgagcgacccgtcccgatcatc
gaggtcagcggccgcacctatcccgtcgaggtccgctaccgaccgctcgaccgcgaggac
gacgtcatcgacgggatcgtcagcgcgatccgcgagctcccccgtgacggcgacgtgctg
gtgttcctgcccggcgagcgcgacatccgcgacaccgccgaggtgctcgagggtcagtcc
ctcggcgacgtcgtgccgctctacggccgactggccgcgcacgagcagcagcgggtcttc
cagaccggcccgcgccggcgcatcgtgctggcgaccaacgtcgccgagacctcgatcacc
gtcccgggaatccgctacgtcgtcgatccggggctggcgcgcatctcgcgcttcagcacc
cgcctgaaggtgcagcgcctgccgatcgagcgcatctcgcaggccagcgccgcgcagcgt
gccggccggtgcggtcgcgtcgccgacggcatctgcatccggctgtacgacgaggaggac
ttcgagtcccgtccggagttcaccgaccccgagatccagcgcacgaacctcgccagcgtc
atcttgcagatggcgtcgctcgacctgggcgacatccgcgacttcgggttcctggacgcc
cccgaccaccgcgcggtcgccgacggcctcacgctcctgcgcgagctggacgccctggcg
cccggacgggacggcagcgaccggctgacgaagctcggtcgcaccatgtcgcggctcccg
ctcgatccccgtcacgcccgcatggtgctggcggctgaccggctcggggtcctgcccgag
gtcctggtcatcgtcgcgggactgtcgatccaggacgtccgcgagcgccccctcgacaag
cagcaggccgctgacacccagcacgcccggttccgccagccggactcggacttcctgtcg
ctgctcaagctgtgggactacctgcaggagcgccgcgacgagctctcgcacacgaagttc
cgccggatgtgccacgacgagttcctgcactatctgcgcgtgcgcgagtgggcggacgtg
aactcgcagctgcgccgcacggtgcgcgagctgggactcaagcccggcaaggtccgcaag
gagccggacgccgatgcgatccaccgcgcgctgctgcacggcctgctctcgcacgtcggc
ctgcgtgacgccgagacccgcgagtacctcggcgcccgcggcgcccgcttctcgatcttc
cccgggtcaggcctggcgaagaagccgccccggtggatcatggccggtgagctcgtcgag
acctcgcggctgttcgcccgcgacaacgcccgcgtggaccccgcctgggtcgagaaggcc
gcaggccacctgctgaagcaccagtactccgagccgcgatggtcggccaagcgcggcgcc
gccgttgcgacgcagcggtcgacgctctacggactgcccgtggtcgtcgaccgcacggtc
atgctggcgcagcacgacgcgccgctggcccgcgagctgttcatccggcacgcgctggtg
ggcggcgagtggcgcacccaccacaagttctggctgcgcaaccaggaccggctggccgac
atcgagaacctcgaggagcgggtccgcacgcgcggcatccgcgtcgacgacgagacgctc
gtcgacttctacgacgcccgcattcccgccgacgtcgtgtcggtgcggcacttcgactcg
tggtggaagaagcagcccgacaagcacctgctcgacttcaccgacgacctcttccgcgcc
gatgtcgacgccgacgccttccctacctcgtggacctcgcagagcaccgacttcgacgcg
gtctacgacgtctcgtaccgcttcgacccgcaggccccggacgacggcatcaccatcacg
gtgcccgtcgacgacctgctgaccgtggacgcggacgagttcgcgtggggtgtgcccggc
cgccggctggagctggtgaccgagctgatccgcggccttccgaagagcgagcgtcgccgg
ttcgcgccggccgcccagtccgccgaacgcgtgctgcccggcctcgacacctcgaaggac
ctgcgcaccgagctgggccgggcgctcgacgtcgacccgtccctgatcgacctgacctcg
ctgccggctcaccttcggccgacgttccgggtcgtggacggcgagcgtgagctggcctca
ggcaaggacatcgacgccctgcggcgcgagctcgagccgagacttcggcgcgacctgcag
cagaaggcgcagagtgaggagcgcacggggatcaccgactgggacttcggcgacctccag
cgcagcatcaccgccggtcaggtcaccggatacccggcgctggtcgacgagggcaagagc
gtcgccctgcgggtgctgcggacccaagccgagcagcaggtcgccatggtccgcggccag
gcccggctcatcgcgctgtccaccggctctccggtcggcacggtcggacgcacactctcg
ttgcaggacaagctgctgctgaccacctcaccgcagggcgacgcggcggcggtcatcgag
gagtcctggctgaccgccctcgaccacctcgtggtgcagcacggcggtcccgtctgggac
gaggccgcctaccggcggttgcgcgatctggtgcgcgccgacgccgtgccgctgaccgag
cgcatcgtgcgccaggtcatcagcgccatgcaggcactcggcgacgtgaaccccggcaag
gacgaggccggcgaggacgtccgggtacagctctcgtggctcctccacccgggcttcatc
cgcgacatgggcgccgagcagatcgggcgcctccaggtctacctccgtgccgccgcgaag
cgcctgacctcgacgaaggacccgagcgagatctgggacctggaggctcgcttccacgag
cgcacgaaggacctgcgcccgtggcagcgcctcacgcctcccgtccggcgcgtgcgctgg
atgctcgaggagctgcgggtcagcgtgttcgcgcaggagctgcgcgccgccgggccgatc
tccccccaacgcgtggccaaggcgctcgccgaactctga
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