Abiotrophia defectiva: FOC79_04420
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Entry
FOC79_04420 CDS
T06623
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
adc
Abiotrophia defectiva
Pathway
adc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOC79_04420 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adc03021
]
FOC79_04420 (rpoB)
03400 DNA repair and recombination proteins [BR:
adc03400
]
FOC79_04420 (rpoB)
Enzymes [BR:
adc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOC79_04420 (rpoB)
Transcription machinery [BR:
adc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOC79_04420 (rpoB)
DNA repair and recombination proteins [BR:
adc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOC79_04420 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QKH46906
LinkDB
All DBs
Position
970539..974198
Genome browser
AA seq
1219 aa
AA seq
DB search
MNRLSHIVKYGKKAERRSYARIDEVLELPNLIEIQTDSYKWFLDEGLKVMFEDISPIVDH
SENLELHFVDYEFKEAKYSLEEARSHDANYSKPIYVTLRLFNKETGEVKEQEVFFGDFPI
MTEMGTFIINGAERVIVSQLVRSPGVYFHDRMDKKGRHSYTSTVIPNRGAWLEFESDAKG
IAYVRIDRTRKIPLTVLMRALGFGSDDEIYDIFGQSELLDLTIEKDVHKNIQDSRTEEAL
KDIYERLRPGEPKTAESSRNLLVARFFDPRRYDLAPVGRYKINKKLHLKNRLVGLTLAET
LVNPETGEVLFEEGTVLDQERVQALIPYLEAGLNKVTLYPSEDSVVAQPIDLQIIKVYSP
KNAEQVINIIGNGNIEKIKCLTPADIIASMNYYLYLDQGIGVTDDIDHLANRRIRSVGEL
LQNQFRIGLSRMERVVRERMSLQDVATITPQQLINIRPVVAAIKEFFGSSQLSQFMDQVN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYA
KINKYGFIETPYRKVDKSVTPHRVTTEIDYLAADEEDLYVVAQANSKLNEDGTFANDLVM
ARFRSQNIEVNVDQVDYMDVSPKQVVAVATASIPFLENDDSNRALMGANMQRQAVPLINP
QSPLIGTGMEYKAAHDSGAALLCKRAGEVVYVDANKVRVRTPEGEVDEYRLTKFARSNAG
TCYNQRPIVELGDQVDALEILADGPSMQNGEMALGQNPLVAFMTWEGYNYEDAVIMSERL
VKDDVYTSIHIEEYESESRDTKLGPEEITREIPNVSEDALKYLDKDGIICIGAEVKDGDI
LVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDEL
APGVNKLVRVYIVQKRKINEGDKMAGRHGNKGVVSLIMPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAAREMGIKIATPVFDGASEEDVWETVKEAGLEADAKTILYDGR
TGEPFDRKVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGQPIPRPGVPESFRVLVKELQALGLD
LKVLDEHDQEIELRDDDDEDEVINFNALDRYKADQMAHHHVAEADDEGEEAKAEINLDDQ
SIAEDFIDSAVEDELDSLD
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcgcttgagtcatatcgtgaaatacggtaaaaaagctgagcgtcgaagctatgcg
cgtatcgacgaagtcttagagttgccgaacttgattgaaatccaaacggattcctacaaa
tggttcttggatgaagggctaaaagtgatgttcgaggacatttcgccgattgtcgaccat
tcggagaacttggaacttcattttgtagactatgagttcaaggaagctaagtatagctta
gaagaagctcgtagccatgacgctaactactcaaaaccaatctatgtaaccttgcgcctg
ttcaacaaagagacaggtgaagtcaaagaacaagaagtcttcttcggggacttcccaatc
atgaccgaaatggggaccttcattatcaacggggcggaacgggttatcgtttcccagttg
gtacgttctccaggtgtctacttccacgaccgtatggacaagaaaggccgccacagctat
acttctacggttattcctaaccgtggggcttggttggaatttgaatcagatgctaagggg
attgcctacgtccgcattgaccggacccggaagattccattgactgtcttgatgcgtgcc
ttaggttttggttcagatgacgagatttatgatatcttcggccaatctgagctcttagac
ttaactatcgagaaggatgttcacaaaaacattcaagactctcgtacggaagaagccttg
aaggacatttacgagcgtctccgtccaggtgaacctaagaccgcagaaagctcacgtaac
ctcttggttgcgcgcttcttcgacccacgtcgctatgacttagcacctgtaggtcgttat
aagatcaataaaaagctccacctcaagaaccgtttggttggcttgactttggctgaaacc
ttggttaacccagaaacaggcgaagtgctctttgaagaaggaacggtcttggatcaagaa
cgtgttcaagccctgattccatacttagaggctggcttgaataaggtaaccctctatcct
tctgaagatagtgtggtagctcaaccaattgatttacaaatcatcaaagtttattcacct
aagaacgccgagcaagtgattaacatcatcggtaacgggaacattgagaagattaagtgc
ttgacgccagctgacattattgcgtcaatgaactactatctctatttagaccaaggaatt
ggtgtgacagatgatatcgaccacttggctaaccgtcgtattcgttcagtcggtgaatta
ttgcaaaaccaattccgtatcgggctatcccggatggaacgggtagtgcgtgaacgtatg
tcgctccaagatgttgcgaccatcacaccgcaacaattgattaacattcgtccagtagtg
gcggctattaaggaattcttcggttcatcccagttgtcacaattcatggaccaagttaac
ccactcggggaattgacccacaaacgtcgtctgtcagccttagggcctggtggtttgacg
cgggaccgtgccggctatgaagtgcgggacgttcactactctcactacggccgtatgtgt
ccaatcgagacgccagaaggtcctaacatcgggttgattaacagcttgtcttcttatgcc
aagattaacaagtatggttttattgagacgccttaccgtaaagtggacaaatcggttacg
ccacaccgtgtcacgaccgaaattgactacctagcagcggacgaggaagacttgtacgta
gtagcccaagccaactctaaactcaacgaagacgggaccttcgccaatgacctagttatg
gcgcgtttccgttcacaaaacattgaggttaacgttgaccaagtagactacatggacgta
tcgccaaaacaggttgtcgctgtcgcgactgctagcattccgttcttggaaaacgacgac
tccaaccgggccttgatgggtgccaacatgcaacgtcaagctgtgccacttattaatcca
caatccccactgattgggactgggatggaatataaggcagcacacgactctggggctgcg
ctcttatgtaagcgcgccggtgaagtggtttatgtcgatgctaacaaggtgcgcgtgcgc
actccagaaggtgaagttgacgaataccgtttaaccaagtttgcacgttctaacgctggg
acctgttacaaccaacgtccaatcgtagaattaggcgaccaagttgatgccttggaaatc
ttagcagatggtccatctatgcaaaatggggagatggccctcggtcaaaacccactggta
gccttcatgacttgggaagggtataactatgaggacgcggttatcatgtctgaacgtctg
gtcaaagacgatgtttatacctctatccacattgaagaatatgaatcagagtcccgtgac
accaagttagggcctgaagaaattacacgcgaaattccaaacgtgtccgaagatgccctc
aagtacttagacaaagacgggattatctgtatcggggcggaagtaaaagacggcgatatc
ttagttggtaaggtaacaccaaaaggtgtgaccgagttgtctgcggaagaacgcttgctc
catgctatcttcggtgagaaggcgcgtgaagtacgtgatacttccttgcgtgtgccacac
ggcgggggcgggattgtccacgacgttaaaatctttacccgcgaagctggcgacgaattg
gcaccaggtgtcaacaagctagtccgcgtctacatcgtacaaaaacgtaaaatcaatgaa
ggggataagatggccggtcgtcacggtaacaaaggggttgtctcccttatcatgccggaa
gaagatatgccattcttaccagatggtaccccagttgatatcatgttgaacccattaggg
gttccatcccgtatgaacatcgggcaagtcctagagttacacttggggatggctgctcgc
gaaatgggcatcaagattgcaacacctgtctttgacggtgctagtgaagaagatgtctgg
gaaacagttaaggaagccggcttagaagctgacgctaagactatcttatatgatggtcga
accggtgaaccatttgaccgtaaagtctctgttggggttatgtacatgattaagttggcc
cacatggtcgatgacaagttgcacgcccgttcaacaggtccatactctctggttacccaa
caaccattgggtggtaaagctcaatttggtgggcaacgtttcggggagatggaagtttgg
gccttggaagcttatggtgccgcttataccctgcaagaaatcttaacctacaagtctgac
gacgtagtcggccgggtgaaaacctacgaagctatcgtcaaaggtcaaccaattccacgt
cctggtgtgccggaatccttccgcgtcctagttaaggaattgcaagccttaggtttagat
ctcaaagttttagatgaacatgatcaagaaatcgaattacgcgatgacgacgatgaggat
gaagtaattaacttcaatgcccttgaccgctataaggctgatcaaatggcccaccatcat
gtagcagaagctgatgatgaaggtgaagaagcaaaggctgagatcaacttagacgaccag
tcaatcgcggaagacttcatcgattcagcggttgaagacgaactcgattcattagactaa
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