Abiotrophia defectiva: FOC79_04425
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Entry
FOC79_04425 CDS
T06623
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
adc
Abiotrophia defectiva
Pathway
adc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOC79_04425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adc03021
]
FOC79_04425 (rpoC)
03400 DNA repair and recombination proteins [BR:
adc03400
]
FOC79_04425 (rpoC)
Enzymes [BR:
adc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOC79_04425 (rpoC)
Transcription machinery [BR:
adc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOC79_04425 (rpoC)
DNA repair and recombination proteins [BR:
adc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOC79_04425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QKH46907
LinkDB
All DBs
Position
974282..977917
Genome browser
AA seq
1211 aa
AA seq
DB search
MIDVNNFEAMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKLKRIRYKGRVCDRCGVEVTRAKVRRERMGHIELAAPVTHVWYFKGIPSRMGLVLDM
SPRLLEEVIYFASYVVIDSGDTPLERKSLLTEMEYREKKREYGDRFYAKMGAEAIKELLD
AVDLEAECAELKEVLKTATGQKRMRAIRRLDILDAFRLSGNKPSWMVLDVLPVIPPDIRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRAVTGPGNRALKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGIAGNIKNAKRMIETQDTAIWPVIEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEEAGRIGEGLVVSDVSEAEIAYQNGYVHLHTRIAIP
AKALVGKPFTDWQKERLMVTTVGKLLFNDIMPLEFPYLNEPSHENLTEKTPDKYFLEPGV
NVPEAIAAMDLVPPFKKKDLGRIIAQVFKRFKITETSVMLDRMKNLGYKFSTRAGITVGA
ADVLRLESKGEILEKAHSRVDNITKQYRRGLITDDERYESVIRTWEQAKDQIQEELRKSL
PRLNPIAMMSDSGARGNISNFTQLAGMRGNMAAPSGRIIELPITSNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGMTVRAIMDGNSVIESLE
ERLIGRYARKTVRHPETGQVLVEANHIITEDMADAIVAAGIEEVTIRSVFTCDTNHGVCK
KCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGGGDITQGLPRIQEI
FEARHPKGQATITEVAGIIESIVEKESDRSRDITVKGVTDTRTYNVPYTSRLKVAEGDSV
ERGQALTEGSIDPKELLRVTDVLTVENYLLREVQAVYRGQGVEIGDKHVEVMVRQMLRKV
RVMDPASTDILPGALLDISDFAKANTNAIQAGEVPATARPVLMGITKAALETKSFISAAS
FQETTRVLTDAAIRGKKDALLGLKENVTIGKLIPAGTGMTRYRKLETNIQPPVVEAEDED
IELENQAPAKA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataattttgaagcgatgcaaattggcttagcgtctccagaaaaaatt
cggagttggtcttatggtgaagttaaaaaaccagaaaccatcaactaccggacgctaaaa
ccagaaaaagacggcttattctgcgagcgcatctttggtccaactaaggactgggaatgt
agctgtgggaagctcaaacgaattcgctataagggtcgggtctgcgaccgttgtggcgtc
gaagtaacgcgtgccaaagtccgtcgtgaacggatggggcatattgagttggcagcgcct
gtcactcacgtatggtacttcaaaggaatcccaagccggatgggcttggtcttggacatg
agtccacgactcttggaagaagttatctacttcgcttcatatgttgtaatcgacagcggc
gacaccccattagaacgcaagtctctcctgactgaaatggaataccgtgagaaaaaacgt
gaatacggggaccgtttctatgccaaaatgggggcagaagccatcaaggaattgttggat
gccgttgatttagaagcagaatgtgcggaattgaaggaagtgctcaagaccgctacaggt
caaaaacggatgcgcgcgattcgtcgcttggacatcttagatgccttccgtttatcaggt
aacaagccatcttggatggtcttggatgtcctacctgttattccaccagatattcgccct
atggtccaattagaaggtggccggtttgcgacaagtgacttgaacgatctctatcgtcga
gtaatcaaccgtaacaaccgtctcaaacgtcttttggacttaggtgcaccaaacattatc
gttcaaaacgaaaaacgtatgttacaagaagcggtcgatgccttaatcgataacggtcgt
cgtggtcgtgccgtaacaggcccaggtaaccgcgcgctcaagtctctctctcacatgttg
aaagggaaacaaggtcgtttccgtcaaaacctcttagggaaacgggtcgactactctggc
cgttcggtaattgtcgtggggccaaacctcaagatgtaccaatgtggtttgccaaaagaa
atggccatcgaactcttcaagcctttcgttatgaaagaattggtggaacgtggcattgct
ggcaatattaagaatgctaagcgcatgattgaaactcaagatactgccatctggccagta
attgaagaagttatcaaggaacacccagttctcctcaaccgggcacctacgctccaccgt
ttggggatccaagccttcgaaccaaccttggttgaaggtcgtgcaattcgtttgcaccca
ctggtctgtgaagcctacaacgccgactttgacggtgaccaaatggccgttcacgtacca
ttgtctgaagaagctcaagctgaagcgcgcttgctcatgttagcggcacaaaacatctta
aaccctaaagatgggaagccagttgttaccccgtctcaggacatggtcttggggaactac
tacctgaccttggaagaggcagggcgtattggtgaaggtttggttgtaagtgacgtctct
gaagcagagattgcttatcaaaacggctacgttcatctccacacccggattgccattcct
gctaaggctttagttggtaagccattcactgattggcaaaaggaacgcttgatggtaacg
accgttgggaaattgcttttcaacgatatcatgccattagagttcccttacctcaatgag
ccttcacatgagaacttaactgagaagacaccagataagtacttcctagagcctggcgtg
aatgtaccagaagccattgcagcgatggacttagttccaccatttaagaagaaagactta
ggtcgcattatcgcgcaagtcttcaaacgtttcaagattaccgaaacctctgttatgttg
gaccgcatgaagaacttgggttacaagttctcaactcgtgccgggattaccgtaggggcg
gccgacgtattacgtctggaatctaagggcgaaatcttagaaaaagcccacagccgtgtt
gacaacattaccaagcaataccgtcgtggtttgattacagacgacgaacgttacgaatcc
gttattcggacttgggaacaagctaaggaccaaattcaagaagaattgcgtaagtccttg
ccacgcctgaacccaatcgcgatgatgtctgactccggggcccgtggtaacatctctaac
tttacccagttagctgggatgcgggggaacatggcggcgccatctggtcgaatcattgaa
ttgcctatcacctctaacttccgtgaaggtttgtctgtcttggaaatgtttatctcgacc
cacggggcccgtaaagggatgaccgatacggccttgaagaccgccgactctggttactta
actcgtcgtttggttgatgtggcgcaagatgtcatcatccgtgaagacgattgtggtacc
gaccgtggtatgacagttcgtgccattatggatggtaactccgtcattgaatcgctggaa
gaacgtttgattgggcgttacgcacgtaaaacggttcgtcacccagaaactggccaagta
ttagtagaagctaaccacattattacggaagacatggcagatgccatcgtggcagcaggg
attgaagaagtaaccattcgttcagtcttcacctgtgataccaaccacggggtatgtaag
aagtgttatggtcgcaacttagcgactggttctgaagtggaagtcggcgaagcagtgggt
accattgccgctcaatccatcggggaacctggtacccagctgaccatgcgtaccttccac
accggtggggttgcgggtggtggcgatatcactcaaggtttgccacgtatccaagaaatc
ttcgaagctcgtcatccaaaagggcaagcaacgattactgaagtggctgggattattgaa
tcgatcgttgagaaagaatccgaccgtagccgtgacatcacggttaagggtgtgacggat
acccgcacttacaatgtaccttacacttcccgtctcaaggttgcggaaggcgacagcgta
gaacgtggtcaagccttaactgaaggttcaatcgatcctaaggaattactccgcgtaacc
gatgtcttgaccgtagaaaactacttgctccgcgaggttcaagcagtttaccgtggtcaa
ggggtagaaatcggcgacaaacacgtcgaagtaatggttcgtcaaatgttgcgtaaggtt
cgcgttatggaccctgcttcaactgacatcttgccaggtgccttactggatatctcagac
ttcgccaaggccaacaccaacgctattcaagccggtgaagtgccagcgacagctcgtcca
gtcctcatggggattaccaaggccgccttggaaactaagtccttcatctctgctgcatcc
ttccaagagacgactcgtgtcttgactgatgctgctatccgcggtaagaaagacgctctt
cttggtcttaaggagaacgttacaattggtaagttgattccagccgggaccgggatgacc
cgttaccgtaagttggaaaccaacattcaaccacctgttgtcgaagcggaagacgaagac
attgaattagaaaatcaagcacctgctaaggcctag
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