Abiotrophia defectiva: FOC79_04545
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Entry
FOC79_04545 CDS
T06623
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
adc
Abiotrophia defectiva
Pathway
adc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOC79_04545 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adc03400
]
FOC79_04545 (mfd)
Enzymes [BR:
adc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOC79_04545 (mfd)
DNA repair and recombination proteins [BR:
adc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOC79_04545 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Cas3-like_C_2
SNF2-rel_dom
AAA_7
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QKH46930
LinkDB
All DBs
Position
1002848..1006399
Genome browser
AA seq
1183 aa
AA seq
DB search
MEFAQEAFQSAIKAINQTGPGSLPQLVTGIDDSARAVMLAQLFQARPRPLLIVEPIASKL
GQLVDDLTQLLPQVSVQAFVVEEALAIEFAFASEDQMRDRIQILNQLAHGEPCIVVTNVA
GLRKQLTHPNQWRQAQHTLELGDNWERRQLESVLTAWGYHRASLVEQPGEFSVRGSIIDF
FPVSAEYPIRLDFFDTELDSIRAFNAETQSSIENLDSVQILPAQDVLFGLEAQQALLPRL
EDMKARALKKVKDQELREAMEAGLSNQMDQLRHGEPLKYPHAYLSLAQDDQVVTLLDYLG
EQGLLVLSEFDKLQQQALHLVEEDQFWIEQETQKGLLLPGLAVKADFQACVRAYSGALLY
LSVMHRGLGHQSLGAVHSFQYRTLNPFFNQMPLVKTEMDHWLKQGYTIQVAVGSLEQARK
VEALFEEFHIGPSVVTEGQAQAKVINIGVGALSNGFELPVLKWVVVTEKELFNKLKKRQA
RQSRTKLTNAERIKSYSELEVGDYVVHVHHGIGQFRGMDTIEMNGIHKDLLSVVYQDDSR
ILIPVDQIHLLQKYVASEAKTPKLNKLGGTEWAKTKRKVAAKIEDIADELIALYAKRERE
VGYAFGPDTPEQSEFESAFAYVETEDQLRSAIEIKADMEKSKPMDRLLVGDVGYGKTEVA
MRAIFKAVMDGKQVAFLVPTTILAQQHYNSLVQRFADYPFEIRLMSRFVSKKQQDQTIDD
LLTGAVNIVVGTHRLVSKDVQFQDLGLLIVDEEQRFGVKHKERLKQLKSQVDVLTLTATP
IPRTLHMSMIGVRDLSLIETPPNNRFPVQTYVMERNDGAIKSGIERELAREGQVFYLYNR
VATIERRAMEIQALVPEARVAYAHGQMSEVELETVLVDFIQGAYDVLVTTTIIETGVDIP
NVNTLFVEDADHMGLSTLYQLRGRVGRTNRVAYAYLMYEPFKSLSEVSEKRLQAVREFTE
LGSGFKIAMRDLSIRGAGNLLGKQQSGFIDSVGFDLYSQMLKEAVNIKRGKKVGQIPSQA
SNQIEWHLLIDAYIPASYIADERQKISVYKQIQQIDSEEAYRNLQDQLIDRYGEFPDEVA
DLLEIALIKHYGLEAGIVKIQQTPRHVKVSFNQMASDQLRGAKLFEALAGISQKSTVSQE
GSRQVISLDILEQPSYVWLGALKQLARQVASLLAEDTSKNKER
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgcgcaagaagcttttcagtcggcaataaaggccattaatcagacagggccg
ggtagcttaccccagttggtaacgggaattgatgatagtgcacgtgccgtcatgctggct
cagcttttccaagctcgccctcggccactcttgattgtggagcccattgctagcaagttg
ggacagttagtagatgatttaacacagcttctgccccaggtgtccgtgcaggcttttgta
gtggaggaggctctggctattgaatttgcctttgcttcggaggatcagatgcgggaccgg
attcagatccttaaccaactagctcacggcgagccctgtattgtagttactaatgtggcc
ggtttacgaaaacaattgactcaccctaatcaatggcgtcaagctcaacatactcttgaa
cttggagataactgggaacgccgccagttagaaagtgtcttaaccgcttggggctatcat
cgggctagcttggtagaacaaccgggcgagttcagcgtacgcgggagtatcattgacttc
ttcccagtatcagccgaatatccgattcgtttggatttctttgataccgagctagattct
attcgggcttttaatgctgagacccagtcctcgattgaaaatctagactctgtccaaatc
ctgccagctcaagatgtcttatttggcctagaagctcaacaagccctcttgccacgttta
gaggatatgaaggcgcgcgccctgaagaaagtgaaggatcaagaattaagagaggccatg
gaagctggactcagcaatcaaatggatcagttgcgccatggcgagcctctcaagtatccg
catgcttatctgagcttggctcaggatgaccaagtggtgacgctccttgattatttagga
gagcaaggacttttagttctgtcagaatttgataagctacagcaacaggctcttcatctg
gttgaggaagatcagttttggattgagcaggagacacaaaaaggcttgcttttacctggc
ttggctgttaaagcagattttcaggcctgcgtgcgggcatattcaggggccttgctctat
ctctcagttatgcatcgaggcttgggacatcaatctttaggagcggttcactccttccag
tatcgcaccctcaaccctttctttaaccaaatgcctctggtcaaaacggagatggatcac
tggttgaaacaaggctataccattcaggtagctgtagggagtttggagcaagctcggaag
gtggaagcactttttgaggaatttcatatcggacctagcgtagtaacagaaggccaagcc
caagccaaggttatcaatatcggagtaggagctctatcaaatggttttgaactacctgtc
ttgaaatgggtagtagtaactgaaaaagaactcttcaataaattgaaaaagcgtcaggct
cgtcaatctcgcactaagctaaccaatgctgaacggattaagagttattcagaattagaa
gtcggtgactatgtggttcatgttcaccatgggataggccaattccgtggtatggacact
atcgaaatgaatggcattcataaggatctcttgtcggttgtttatcaagacgactctcgt
attctgattccggtcgatcaaattcatctgctacaaaaatatgtcgcctcagaagccaag
acacctaagcttaacaagctcgggggcactgagtgggctaagactaagcgcaaggtagcg
gctaaaatagaagacattgccgatgaattaatcgccctctatgctaagcgagaacgagaa
gttgggtatgcttttgggcctgatacaccagagcagagtgagttcgagtcggcttttgct
tatgtagaaacagaggaccaactccggtccgcaatagagattaaggcagatatggaaaaa
agcaagcccatggaccgcctgctagtcggtgacgtaggttacggcaagaccgaagtagcc
atgcgggccattttcaaggcggtcatggacggcaagcaagtggccttcctagtccctact
acgattttagctcagcaacactataattctttggttcagcgttttgctgattatcctttt
gaaattcggctgatgagtcgctttgtatctaaaaagcaacaagaccagaccatcgatgac
ttgctaacgggggccgtgaatattgtggtcgggactcatcgcttggtctctaaagatgtc
cagtttcaggatttaggcctgttgattgtcgatgaggagcaacgttttggggtcaagcac
aaggaacggctcaaacaactcaagtcacaggttgatgtcttaaccttgacggcgacgcca
attcctcgcaccttgcatatgtccatgataggtgttcgggacttgtccttgattgagaca
ccacccaataaccgtttccccgtccagacctatgtcatggagcgcaatgatggagcgatt
aagtcaggtattgaacgtgagctagcacgcgaaggtcaggtcttctatctctataatcga
gtggcgactattgagcgtcgggccatggaaatccaggctttggtaccagaggctagggta
gcttatgcccacggtcagatgtcggaggtggaattggagacggtgctagtggactttatc
caaggggcttacgatgtcctggtgactaccaccattattgaaacaggggttgatattcct
aatgttaataccctttttgttgaagatgcggaccatatgggtttatccaccctctaccaa
ttacgtgggcgggtagggcgcaccaatcgagtggcctatgcttatttgatgtatgagcca
tttaagtcactcagtgaggtcagtgagaaaagattgcaggctgtccgcgaatttacagag
ttgggatcaggctttaagattgctatgcgggacctgtccattcgaggggcagggaatctg
ctgggtaaacaacaatccggctttattgattctgtcggttttgacctttattcccaaatg
cttaaagaagctgttaatattaagcggggcaagaaggttggtcagataccaagtcaagct
agcaaccagattgaatggcatctgctaatcgacgcctatattccagccagctatatcgcc
gatgaacggcaaaagatttcggtctataagcaaattcaacagattgattctgaagaagcc
tatcgtaatctgcaagatcagttgattgaccgctatggtgaattcccagatgaggtggcg
gatttattggaaattgccttgattaaacattatgggctcgaagcgggcattgtcaaaatc
cagcaaaccccacgtcatgtcaaggtcagcttcaaccagatggcctcagatcaattacga
ggggccaaactttttgaagccttggctggcatttcccagaaatccaccgtgtctcaagag
ggctcgcggcaggtgattagcttggatatcctagaacaaccatcctatgtttggttagga
gcccttaagcaattagcccgtcaagtggctagcctcttagcagaagacactagcaaaaat
aaggagagataa
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integrated database retrieval system
