Abiotrophia defectiva: FOC79_05325
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Entry
FOC79_05325 CDS
T06623
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
adc
Abiotrophia defectiva
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
adc03009
]
FOC79_05325 (rlmD)
Enzymes [BR:
adc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FOC79_05325 (rlmD)
Ribosome biogenesis [BR:
adc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FOC79_05325 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
Methyltransf_15
MTS
Methyltransf_11
TRM5-TYW2_MTfase
TRAM
PrmA
Ubie_methyltran
Methyltransf_12
RrnaAD
UPF0020
N6_N4_Mtase
TRM
Methyltransf_23
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QKH47062
LinkDB
All DBs
Position
1173183..1174559
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AA seq
458 aa
AA seq
DB search
MDAKQVFKKNQVHQGQVVDLTHEGQGVVKIEGYPFFVEGVIPGEQVAIKVLKVGKSFGFA
RLEEVLTPSPDRVEITDPIGRQIGTMTLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEV
RPTYGMDHPWQYRNKAQIPVRTVKGQLETGFFRKNSHQLVPVENFHIQDPAIDQAILVTR
DILRQLGYSAYDEESRKGQIRHIIVKRGHYSGQVMLILVVNGKGLPAEDKLIKALTKAIP
NLVSLVLNSHTQANNVIMGPTNRLLWGQPVYQDQMLGLDFSISPHSFYQVNTPQAEALYR
YALEAADLSGSETVLDAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNV
TFQAGKAEEVLPAWQAEGIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCA
RDCQLLAQAGYELQWVQPVDLFPKTAHIEVVGLLERKG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaaaacaagtatttaagaagaatcaagtacaccaaggccaggtagtcgacttg
acccatgaaggccagggtgtcgtcaaaatcgagggctatcccttctttgtggagggcgtt
attccgggcgagcaggtggccattaaggtcctcaaggtcggcaagtccttcggatttgcg
cgcctagaagaggttctaacgcccagtccggatcgagtggagattaccgaccctatcggc
cgtcagattggcaccatgaccttgcaacatatggcttatcctgcccagctcaaggctaag
caggccctagtcaagcaggtcttcagtcgcctagggaaattcccggaaagtctggaagtc
cggccaacttatggcatggaccatccttggcaatatcgtaataaggcgcaaatcccggtg
cggactgtcaaaggccagctagagactggcttcttccgcaagaatagccatcagctagtg
cccgtagagaatttccatattcaagatccggccatcgaccaagccattttagtgacgcgg
gacattctgcgccagctaggctactcggcttacgacgaggaaagtcgcaagggccaaatc
cgacatatcatcgtcaagcgtggtcactatagcggccaagtcatgttaatcctggtcgtc
aacggcaaaggcctgccagctgaggataagttgattaaggcactcacaaaggccattcct
aacctagttagcctggtcctcaatagtcatacgcaggccaataatgtcattatgggacca
accaatcgcctcttgtggggccagccagtttatcaggaccagatgttggggctggatttc
tccatctccccacattccttctatcaggtcaacactcctcaggccgaggccctctatcgt
tatgcccttgaggcagctgatttatctggcagtgaaaccgtcctggacgcctattgcggg
attggcaccatctccctggccctagcccgccaagccggtcaggtctatgccatggaaatc
gtgcctgaagctattgatatggcgcgggccaatgccgaggccaacggcctaagtaatgtc
accttccaagccggcaaggccgaagaagtgctgccagcttggcaggcagaaggcattcat
tttgatgtagcggtggtcgacccaccacgcaagggcctagaccctgaattcgttaagacc
ctgattgaactggcgccagacaagatcgtctacgtgtcctgtaacccagccacctgcgcc
cgtgactgccaactcttggcccaggcaggctatgagctgcagtgggtgcagccggttgac
ttattcccgaagactgcacatatcgaggttgtaggactgctggagagaaagggataa
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