Abiotrophia defectiva: FOC79_06530
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Entry
FOC79_06530 CDS
T06623
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
adc
Abiotrophia defectiva
Pathway
adc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOC79_06530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adc03019
]
FOC79_06530
03009 Ribosome biogenesis [BR:
adc03009
]
FOC79_06530
Enzymes [BR:
adc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOC79_06530
Messenger RNA biogenesis [BR:
adc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOC79_06530
Ribosome biogenesis [BR:
adc03009
]
Prokaryotic type
rRNA helicases
FOC79_06530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
AAA_19
Helicase_RecD
MptE-like
DUF4364
Motif
Other DBs
NCBI-ProteinID:
QKH47875
LinkDB
All DBs
Position
1426568..1428070
Genome browser
AA seq
500 aa
AA seq
DB search
MGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPMLNKLDKNQSAIQGLVVAPT
RELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIEWIKRNQPQIVVGTPGRILDLMRRK
ALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPASRQTLLFSATMPPEIRSLADQFLK
EPAHVKIEAKQMTADLIEQFFIKCRDDEKFDIFTRLLDVQMPTQAIVFCRTKKRVDEVAR
GLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELLVATDVAARGLDISGVTHVYNYDIS
QDPESYVHRIGRTGRAGNEGMSITFVTPAEMSYLRVIEDLTRKRMQPMKPPTLKEAQAGQ
VQSLIDQLNETLEAGDADEHRNTAKLLLNHYQANDLVAAMLGQILSSNSQVEVQISPQKP
LPNAHRKSGGYKTGKGGGNGRRGHHGKKRDFHKDRGDRQDQGHKERFDRKDKRPRSAAKP
VGKPKADGGKKQYTIKKRTN
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgaagagccaaccccgatccaacaacaagcagtgcctgtggccttagaaggc
caagacttgattggtcaagcccaaacagggaccgggaagacggcggcctttggcttgcca
atgctcaataaattggacaagaaccaatctgccatccaaggcttggtagtagccccaacc
cgggaattagccatccaagtacaagaagaactctaccgcttaggtaagtaccaacgtgcc
cgtatttatgtggtctacgggggttcctccatcggtaagcaaatcgaatggatcaagcgt
aatcaaccacaaatcgtggtcgggacaccaggtcgtattctagatttgatgcgtcgtaag
gcacttagcctcaagcatctcaagaccttagtcttagacgaagccgacgaaatgctcaac
atgggctttattgaagacgtcaaggaaatcgtggcgaccacgccagcttcacgtcaaacc
ctcttgttctcagcgaccatgccacctgaaatccgcagcttagcagaccaattccttaag
gaacctgctcacgtcaagattgaagccaagcaaatgaccgctgacttgattgaacagttc
ttcatcaaatgccgggatgacgagaagtttgatatcttcactcgcttgttggatgttcag
atgccaacacaagccatcgtcttctgccgtactaagaagcgggttgacgaagtggcacgg
ggcctcagcctgcgcggctacaatgctgaactcatccacggtgacatcccgcaacagaag
cggactagcgtcatcaatgccttccgtcaaggtcaagtagagctcttggtagcgactgac
gtggcggcgcggggcttggatatttccggcgtgacccacgtctacaactatgatatcagt
caggacccagaatcttacgttcaccgtattggtcgtacaggccgtgccggcaacgaaggc
atgtccatcaccttcgtgacgccagcggaaatgtcttatctgcgtgtgatcgaagatttg
acccgcaaacgtatgcaaccaatgaagccgccaaccttgaaggaggcgcaagcaggtcag
gttcaatcattgattgatcagcttaacgagaccttggaagccggcgatgctgatgagcac
cgcaacacggccaaactcctgctcaaccactatcaagctaacgacttggtagcggctatg
ttagggcaaatcctgtctagcaacagccaagtagaagttcaaatttcaccacaaaaacca
ttgccaaatgcccaccgcaaatccggtggctacaagactggcaagggcggcggcaacggc
cgtcgtggtcatcacggtaagaagcgggacttccacaaggaccgtggcgaccgtcaagac
caaggtcataaggaacgttttgaccgcaaggacaagcggccacgttcagctgctaagcct
gtaggcaagcctaaggcggacggcggcaagaaacaatataccattaaaaaacgaaccaac
taa
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