Abiotrophia defectiva: FOC79_08180
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Entry
FOC79_08180 CDS
T06623
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
adc
Abiotrophia defectiva
Brite
KEGG Orthology (KO) [BR:
adc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adc03019
]
FOC79_08180
03009 Ribosome biogenesis [BR:
adc03009
]
FOC79_08180
Enzymes [BR:
adc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOC79_08180
Messenger RNA biogenesis [BR:
adc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOC79_08180
Ribosome biogenesis [BR:
adc03009
]
Prokaryotic type
rRNA helicases
FOC79_08180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_30
AAA_19
CMS1
DUF3780
Motif
Other DBs
NCBI-ProteinID:
QKH47573
LinkDB
All DBs
Position
1776662..1778005
Genome browser
AA seq
447 aa
AA seq
DB search
MTRPTIESLELAPFIKEALGQLGFSRLTPVQEAVIPYALKGRNLIVQSQTGSGKSHSFLI
PIFQQLDPSLDQVQVVITAPSRELATQLYQAAKQLASTSPEPLRVVHYMGGTDKQRQVDK
LQAGQPQVVIGTPGRIYDLMASHALHVQTAKIMVVDEADMTMDLGFLQVVDDIASRMPED
LQLMVFSATIPQQLEVFLNKYVTNPEFIQIEPQEVLASKIDNYLINTKGRDRSALVYDLL
TMGHPFLALVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKDLEYQYVV
ASDLAARGIDIPGISMVINTELPKELEFFVHRVGRTGRNQLAGTAYTFMTPDDDRAIVEL
EAKGIDFQQVDLVKGEIRPVQSRHRRLERTDTKQDKEDPTVRAMINRNKKKKVKPGYKRK
LNYQIKEHRQKEARKQKRAERRQARKA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactaggccaaccattgaaagtctcgagctagccccttttattaaggaagctctcggg
caactgggattttcccgcctaacgcctgtgcaagaggcggtcattccctatgccctcaaa
gggcgcaacctgattgtccaatcccaaacgggctcaggtaagtctcatagttttttgatt
cctattttccagcaactagaccctagcttggaccaagtccaagtggtgattacagcccct
agccgggaattggctacccagctctaccaagcggccaagcaactggctagcacaagtcca
gagcctttgcgggttgtgcattatatgggcgggacagataagcaacgtcaagtggataag
ttgcaggcgggtcaaccccaagtcgtgattgggacgccaggtcgtatctatgacttgatg
gctagccatgccctccatgttcaaaccgccaaaatcatggtagtcgatgaagccgatatg
accatggatttaggttttcttcaagtggtcgatgatattgcttctcgcatgccagaagat
ttgcagctcatggtcttctctgcaaccattcctcaacagcttgaggtcttcctcaacaag
tatgtgaccaaccctgagttcatccagattgagcctcaggaggtcttagctagcaagata
gataactacctgattaataccaaagggcgggaccgctcggccttggtctatgatctctta
accatgggccatcctttcctggccttggtcttctgtaatactaagaagtatgctgcagaa
ttgacccaatgcctcaaggaacgtggcctaaaggtggcctccattcacggggatttaacg
ccacgtgaacgtaaacgggtcatgcgtcaaatcaaagacttagaatatcaatatgtcgtc
gcttctgacttggctgctcgtgggatcgacattccaggtatttccatggtcattaacacg
gaattacctaaggagctggaattcttcgtgcaccgggtagggcggacagggcgtaatcag
ctggccggcaccgcctataccttcatgacgccggatgacgatcgggcgattgtggaatta
gaagccaagggcattgacttccaacaggttgacttagtcaagggcgaaatccgtcctgtt
cagtcacgccatcgtcgtttggaacggacggacaccaagcaggataaggaagatccaacc
gtaagggccatgattaaccgtaacaagaagaagaaggttaagcctggctataaacgtaag
ctcaattaccaaatcaaggagcaccgccagaaggaagcccgtaagcagaaaagggcagag
cggcgccaagctcgaaaagcttag
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