Anaeromyxobacter dehalogenans 2CP-C: Adeh_4332
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Entry
Adeh_4332 CDS
T00326
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ade
Anaeromyxobacter dehalogenans 2CP-C
Pathway
ade03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ade00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Adeh_4332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ade03400
]
Adeh_4332
Enzymes [BR:
ade01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Adeh_4332
DNA repair and recombination proteins [BR:
ade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Adeh_4332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABC84095
UniProt:
Q2IHN6
LinkDB
All DBs
Position
4982740..4986465
Genome browser
AA seq
1241 aa
AA seq
DB search
MPPAPSPAMTAATGETPGASARDRVRRALEEKRRADVTGLVGAARGLLVRDLLAPGPGRA
RSVLAVAADEEEADALARDLAFFLGEGAVLRVPADAVLPYDDLSPDRGVEMERLAALARL
HLAPEQAKAVVVSARALARRTVPRRVFEAGSDLLGKGIEVDREALAAKLVLLGFARTPLV
EDPGTFAVRGGIVDLWSPADPRPVRLEFFGDEIESCRAFDPSNQRSEGDVEEVLLCPSRE
ALFTEEGKEAAKTAVREVAERVNRPTSRVREVLDAIDAGTPFFGLEALLPGFHPGGLGTL
FDYLPPGTAVYVDGVAAVEDALAELDEALAREHAAALDREELVLPPAAHFLPGAEARARA
LALPTVVRHQVWLGTEEPIRVALEETAGIRAEIEGAHGEEGALAPLTRRLEDWRKRGIAA
VVAAGTASASERLRRLLEDRRQHSRVHTGPPGAPRELYDPAVHVHVFAGEISAGFVDAAA
GLAVVSDEEIFGRRVRKKARRAAEENAFAAAFRELNEGDLVVHVEHGIAKYLGLTKMQIR
GVEGDFLVLAYDGADRLYLPVAKLRQVQKFTGASPETIRLDRLGGSSFALRKARVKEQLL
KMAAELLDIYAARAAHPGFAYPEPDELFREFEAEFPWEETPDQAKAIEDVVRDMRKGRQG
PAAAAPMDRLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQHERTFRERFKG
YPVRIEAVSRMRTADEVKRALKAAADGKVDILVGTHRLLAADVSFKDLGLVVVDEEQRFG
VAHKERLKKLRKLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRAIRTFVMKFDP
AAVKEAIETELKRGGQVFFVHNRVRSIHAMQRFLGELVPKARVGVAHGQMGEGKLEHVMT
QFVDKELDVLLATSIIESGLDIPSANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLL
VPARRPVTKDAQKRLEVLQRFSELGAGFKIASHDLEIRGAGNLLGKDQSGQIEAVGFELY
QELLDEAVRELKGEAPREEIDPDVQLPVPAFIPDPYMPDVHQRLFFYKRLAQASTDEDLD
EVRAEMVDRCGDPPDEVDALFEVMAVKVRLRALRIRALETGPGRLVLTLGESAALDPFQL
AKHVQASAGALRLTPDMKLVAQLGGPPAPKAVAARPAKGAAARQSPRQAAAQRRVAADAA
RRAQPPPAAAPSPAMQAASGRELLQAVREVLAGLARCARAE
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgctccgagccccgccatgaccgcagcaacaggagagaccccgggcgcgagc
gcgcgcgatcgcgtgcgccgcgccctcgaggagaagcgccgcgccgacgtcaccggcctc
gtgggggccgcgcgcggcctcctggtccgcgacctgctcgcccccggcccgggccgcgcc
cgctcggtgctggcggtggcggcggacgaggaggaggcggacgcgctcgcccgcgacctc
gccttcttcctgggcgagggcgcggtgctccgcgtccccgccgacgcggtgctcccctac
gacgacctctcgcccgaccgcggcgtggagatggagcggctcgccgcgctggcgcgcctg
cacctcgcccccgagcaggcgaaggcggtggtggtctcggcccgcgcgctggcgcgccgc
accgtgccacggcgggtgttcgaggccggctcggacctgctcggcaagggcatcgaggtg
gaccgcgaggcgctcgccgcgaagctcgtgctgctcggcttcgcccgcacgccgctcgtc
gaggacccgggcacgttcgcggtccgcggcggcatcgtggacctttggagcccggccgac
ccgaggccggtgcggctcgagttcttcggcgacgagatcgagagctgccgcgcgttcgac
ccgtccaaccagcgcagcgagggcgacgtggaggaggtgctgctctgcccctcgcgcgag
gcgctcttcaccgaggagggcaaggaggccgccaagaccgcggtgcgcgaggtcgccgag
cgggtgaaccgccccacctcgcgggtgcgcgaggtgctcgacgccatcgacgccggcacg
ccgttcttcgggctggaggcgctgctccccggcttccacccggggggcctcggcacgctg
ttcgactacctgccgcccgggaccgcggtctacgtggacggggtcgcggcggtggaggac
gcgctcgccgagctcgacgaggcgctcgcccgcgagcacgccgccgcgctggaccgcgag
gagctggtgctgccgcccgcggcgcacttcctccccggcgccgaggcgcgcgcccgcgcg
ctggcgctgccgacggtggtccggcaccaggtgtggctcggcaccgaggagcccatccgc
gtcgcgctcgaggagaccgccggcatccgcgccgagatcgagggcgcgcacggcgaggag
ggcgcgctcgccccgctcacccggcggctcgaggactggcgcaagcgcggcatcgcggcg
gtggtggcggccgggaccgcgtcggcgtccgagcgcctccgccgcctgctcgaggaccgg
cgccagcactcgcgcgtccataccggcccgcccggcgcgccgcgggagctctacgacccg
gcggtgcacgtgcacgtcttcgccggcgagatctcggccggcttcgtggacgcggccgcg
ggcctggcggtggtctccgacgaggagatcttcggccgccgcgtgcgcaagaaggcgcgc
cgcgccgccgaggagaacgcgttcgcggcggcgttccgcgagctgaacgagggcgacctg
gtcgtgcacgtcgagcacggcatcgccaagtacctgggcctcaccaagatgcagatccgc
ggggtggagggcgacttcctcgtcctcgcctacgacggcgccgaccggctctacctgccg
gtcgcgaagctgcgccaggtgcagaagttcaccggcgcctcgcccgagacgatccggctc
gacaggctgggcggcagctccttcgcgctccgcaaggcgcgggtgaaggagcagctcctc
aagatggccgccgagctgctcgacatctacgcggcccgcgccgcccaccccggcttcgcc
tacccggagccggacgagctgttccgcgagttcgaggcggagttcccctgggaggagacg
cccgaccaggcgaaggccatcgaggacgtggtccgcgacatgcgcaagggccgccagggc
ccggccgcggccgcgcccatggaccggctggtctgcggcgacgtgggctacggcaagacc
gaggtggcgatgcgcgccgccatgctggcggtgctcgcgaagaagcaggtggcggtgctc
gtgcccaccaccgtgctcgcggcccagcacgagcgcacgttccgcgagcggttcaagggc
tacccggtgcgcatcgaggcggtctcgcgcatgcgcaccgccgacgaggtgaagcgggcg
ctgaaggccgccgccgacggcaaggtggacatcctcgtcggcacgcaccggctgctcgcg
gccgacgtgtcgttcaaggacctgggcctggtggtggtggacgaggagcagcgcttcggc
gtcgcgcacaaggagcgcctgaagaagctgcgcaagctcgtggacgtgctcacgctcacc
gccacgcccatcccccgcaccttgcacatgagcctcgccggcgtgcgcgacctctccatc
atcgcgacgccgccggaggaccgccgggccatccgcaccttcgtgatgaagttcgacccg
gccgcggtgaaggaggccatcgagaccgagctgaagcgcggcgggcaggtgttcttcgtc
cacaaccgcgtgcgctcgatccacgccatgcagcgcttcctcggcgagctcgtgccgaag
gcgcgggtgggcgtcgcgcacgggcagatgggcgaggggaagctcgagcacgtcatgacg
cagttcgtggacaaggagctcgacgtgctcctcgccacgagcatcatcgagtccggcctc
gacatccccagcgcgaacaccatcatcgtgaaccgcgccgaccacttcggcctggcgcag
ctctaccagatccgcggccgcgtcggccgaagccgggagcgcgcttacgcgtacctgctc
gtgccggcgcgccgcccggtcacgaaggacgcgcagaagcggctcgaggtgctccagcgg
ttcagcgagctgggcgccggcttcaagatcgcgagccacgacctcgagatccgcggcgcg
ggcaacctgctcggcaaggaccagtccggccagatcgaggcggtggggttcgagctgtac
caggagctgctcgacgaggcggtgcgcgagctgaagggcgaggcgccgcgcgaggagatc
gacccggacgtgcagctgccggtgccggcgttcatccccgacccgtacatgcccgacgtc
caccagcggctgttcttctacaagcggctcgcgcaggcctccaccgacgaggacctcgac
gaggtccgggccgagatggtggaccgctgcggcgacccgccggacgaggtggacgcgctg
ttcgaggtcatggcggtgaaggtccggctgcgcgcgctgcgcatccgcgcgctcgagacc
gggccggggcggctcgtcctcacgctgggcgagtcggccgcgctcgacccgttccagctc
gcgaagcacgtgcaggcctcggccggcgcgctccggctcaccccggacatgaagctggtg
gcgcagctcggcgggccgccggcgccgaaggccgtcgcggcgcgcccggcgaagggcgcc
gcggcgcggcagagcccgcggcaggctgcggcacagcgccgcgtggccgccgacgccgcc
cgccgcgcccagccgccgccggccgcggcgccctcgccggcgatgcaggccgcgagcggc
cgcgagctgctgcaggcggtgcgcgaggtgctcgccggcctggcgcgctgcgcgcgcgcg
gagtga
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