Acropora digitifera (stony coral): 107328331
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Entry
107328331 CDS
T04352
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
adf
Acropora digitifera (stony coral)
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107328331
Enzymes [BR:
adf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107328331
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107328331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107328331
NCBI-ProteinID:
XP_015748560
LinkDB
All DBs
Position
Un
AA seq
1857 aa
AA seq
DB search
MAEERSAEATGNRPALDVQVGGPFPIRIRIDNPLLAAAFLGAGFLTLRAFYNENPGAVTT
AVRTALAGLVDNVLSIQPSSILVEFVCYTEERYQAFMNAFATGTVKQRLQEEFSKIGFKD
QLQVTIVCDDNAPQISRAERDEHYHSSPRDNSDASLFDSDDEEDDADDADETDEVLSDDF
GEETNDEEEFGDLEESDTELSDEEPGESQKDEGENVEHPVKSRRVDVSEFVRERFYGEYV
TARCLNILTDFVDAEIFIIEGDSLLFELLGEESLDWSHGGQFLHLIYLLERFLQHFTDKG
GVFHIVFFKDMETIWKTQPSMLLARQTIILHLQHNTSFTVVTSINHFWGEEWKEYVQDQM
PAFMLLTDAENIPWKTERRTKPESVVEFLFRSLLMHCLGKGLNCVYISGIQMTATKVLGF
YMESSATHKELLRMREKSVQEKWLDQASGNNLGDAGTSSQSQCQIDVEAEVQTALQSPPQ
GGCRELVTVLACSNVLSKVLNGPDMSEETVETAKTRMKLFLLHTVLLNKLPLKYRAQSLN
NTLLDEFSKTQDGKVYPFHEIHLSLWEILKSMDDTSACKSLNMTSVADLMDGRFLHTLIC
LALEQTSKGLEGPSLPESVINEAETSWSKVVASVNNVHPSVSLESQFYPLVAKRVTESLM
MKEESFEPEPTGVRLQRLLEVENPLVNEYAGDVRTKINAMAGDKDEDEVFKIGREFDELY
HWHSLRPLSDDFDRTKADQDKPPDDPYKRKLYLKEKQKYPRFLRLYGNSLVGGIDKAKII
TVTETEAKKKTGKKKQGKMAVQLSVHTTSARFQLEYMGHLLKREQRTDADHDPRVEHFIP
DTWQAIAVIACVNSLKGGDKNESAVVVAPTSSGKTYASYYCMEKVLRQSNDGVVVYVSPT
KALANQVVATVYARFHRKPLPDGRAVYGIFTRDYRRNALNSQILVTVPQCLEVLFLSPRR
QEWTKNVKYVIFDEVHCLGEEIGAEVWEHLLLLIRCPFLALSATIGNPRDLMTWLQAAQD
FRERQDEQDKGKLRNSYKIRLVTCEERYSDLEKSVYLPSPINGGFCKETYTYEKKYQLKN
SGEFVRLHPCAQLGPKQFLENGFPGDMALTPGEALQLYDVMVKQWPDKESMQKLSPEQYF
LENKLIRKSHARQYELDVKKEFKTWADEKQSKKVQCVIQSLNSVCQEKQASTEDEWSNLR
LPSCGNFFIRMNFPKLVDQLRAQDKLPALVFSFDRVMCQRLSERLTMEFEDREADIRARD
GQRALKRAERRRAKAEKKLKKTRDETEKEKAQRIANQQDEGDGEDFSALDEPLPECTVAF
RHGIGKQDMNKIMDRMRFVKSRNIFRRIWKRGVSYHHAGLGNKERSCVEMLFRKKYLQVV
AATGTLALGIHMPCKTVVFAGDSPFLNSLQYRQMSGRAGRRGFDPVGNVVFFGVPHRKVQ
RLITANIPKLVGNFPINVSLVLRLLLMTSKGGDEKDALTKALTLLSHPFICQKHPEMKNQ
IKKHFLFSVELLARLSLINNETGAPQEMAGLATHLHYHEPSNYVLVSFLQSGLFHDLCQP
GLKGKGKFSEDVMRKMVLILSHLFGRRFLHPSFKRRIHLCPTSKVILEDLPDEFANAIQD
YNRKVTEVFSQYLQTVAAELEKDRGEEKKLPLSGIEFPDTTSITDLVENDTIKSLARSSI
AYSACSSFAALSGNSDLHLHSTDQKTAVHWERWEREESVADGREENEDESDSDEEDEAEH
REPIEHLLKIIRQDVYTDMNVVPILPLKEASSGGRVLHLNAYALDFFKHGSEKVIEKENG
IKAGEVFSLLRDFYLTIKSISCSLEELGPEDDDVVLAFKQLAREFGEKFNNQFNSDM
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaacgttccgcagaagctacaggaaatagacctgctcttgacgttcaagtt
ggtggaccatttcccattaggattcgaattgacaaccccctgttagcagcagcattctta
ggtgccggcttcctaacgttaagagctttttacaatgaaaatccaggggcagttacgact
gcagtaagaactgccttggcaggtttggtggataatgtcctgtcaatacaaccgtcttct
attcttgtcgaattcgtttgttatacagaagagaggtatcaggcatttatgaatgctttt
gcgacagggacggtaaagcaaagactacaagaggaattttctaaaattggattcaaagac
cagttgcaagtgacgattgtatgcgacgacaacgcgcctcagataagtagggccgaaaga
gatgagcattaccattcctcgcctcgtgataattctgatgcctcgttatttgactccgat
gatgaagaggacgacgcagatgatgctgatgagacagatgaagtcttgtctgacgatttc
ggagaggagacaaacgacgaggaagaattcggagatctagaggagtctgacaccgaactt
tcagatgaagaaccaggcgagtcgcagaaggatgaaggtgaaaacgtggaacatcctgtt
aaatctcggcgtgttgatgtctccgagtttgtccgtgaacgtttctacggagaatacgtg
acggcaaggtgtcttaacatcctgacagactttgtggatgcagagatttttatcattgaa
ggtgactcgttgctttttgaacttcttggcgaggagagcctggactggagtcatggtgga
cagtttctgcacctcatctatctattggaacgctttttacaacatttcacagacaaaggt
ggtgttttccacatcgtctttttcaaagacatggagaccatctggaagactcaaccgtcc
atgttgctagctcgccagaccattattcttcatcttcagcacaacacatcattcaccgtt
gtcacgtcaatcaaccatttctggggcgaagagtggaaagaatacgttcaagaccaaatg
cctgcatttatgctactaacagacgcggaaaacattccttggaaaaccgaaagaaggaca
aaaccagaatcagtcgtagagttcctcttcaggagccttctgatgcattgccttggaaaa
ggcttaaactgtgtgtacatatcgggtatccagatgactgcaaccaaggtactgggattt
tacatggagtcctcagcgacacataaagagctcttgagaatgcgagaaaagtcagtccag
gagaaatggcttgatcaggcatcagggaataaccttggggatgcgggaacgtcttctcag
tcacagtgtcagattgatgttgaagcagaagtacaaactgcccttcagtctccaccacaa
ggaggctgtcgtgagctggttaccgtcctcgcctgctcaaacgtcttgagtaaagtgctt
aacggacctgacatgagtgaggaaacagtagaaacggccaaaaccagaatgaagctattc
ctacttcacactgtgctgcttaacaagctaccattgaagtacagagcacagtctttaaac
aacaccttgctggatgaattctctaaaacacaagatggtaaagtttatcccttccacgag
attcacttaagtttatgggagattttaaagtcaatggatgacacaagtgcttgcaagtca
ctaaacatgacttcagtggcagatctaatggacgggcgttttcttcacactctcatctgc
cttgccttggagcaaacgtccaagggattggaaggccccagtctaccagagagtgtaatc
aatgaagcggagacttcttggagtaaagtggtcgccagtgtgaataacgttcatccttct
gtttcccttgaatctcaattttatcccttggttgccaagcgagtgacagaatctttaatg
atgaaagaggaaagttttgagccagaacccaccggtgtgaggctccagcgtctccttgag
gttgaaaatccgcttgtgaatgagtatgctggggacgtgaggacaaaaattaacgccatg
gctggagacaaggatgaggacgaggtattcaaaattggtcgggaatttgatgaactgtat
cactggcattccctgaggcctctttctgatgatttcgacagaacaaaggcagaccaagat
aagcctccagatgatccttataaaagaaagctgtatttgaaagaaaagcaaaagtaccct
cgcttcctaagactttacggcaactcacttgttggcggcatcgacaaagcaaagatcatc
actgtcacggagactgaggctaagaagaaaacaggaaagaaaaagcaagggaagatggcc
gtacagctttctgttcacactacaagcgcaagattccaactggagtacatgggacacttg
ttgaaacgagaacagcgcacggatgctgatcatgatcccagagtggaacactttattccg
gatacttggcaggctatcgctgttatagcttgcgtaaactccttaaaaggcggggataag
aatgagtcagcggtggtggttgcgccaacctcatcaggaaagacttacgcctcttattac
tgcatggagaaagtgttgagacaaagtaatgatggtgtggtggtgtatgtttcaccgaca
aaggctttagcgaatcaagttgttgccacagtctacgctcgttttcaccgcaaaccgctc
ccagacggacgagccgtgtatggtatctttaccagggattatcgacgtaatgcattgaat
tcccagatccttgttacggttccgcagtgcttagaggtactttttctctcacctcgcaga
caggagtggacaaagaatgttaaatatgtgatcttcgacgaggttcactgtcttggcgaa
gagattggagcggaagtttgggagcatctccttcttctgattcgttgtcctttcctggcg
ctctcagcaaccattgggaatccacgtgacttgatgacctggttgcaagctgctcaagac
tttcgcgagcggcaggatgaacaagataaaggcaaactgaggaattcatacaagatcagg
ctagttacttgcgaagagcgatactccgatctggaaaaaagcgtataccttccaagtccc
ataaacggtggtttttgtaaagagacgtacacatacgagaagaaataccagcttaaaaac
tcaggagagtttgtgagacttcatccatgtgcccagcttggacccaaacagttcctggaa
aatggttttccaggtgatatggctcttacacctggagaggctcttcaattgtatgacgtc
atggttaagcaatggcccgacaaagaatccatgcagaagctttctccagaacaatatttc
ttggaaaataagttgattcgaaagagtcatgctcgacaatacgagctcgatgttaaaaag
gaattcaagacctgggccgacgaaaaacagtccaagaaggtgcaatgcgtgattcagtcc
ttaaattccgtatgccaagagaaacaggcttcgactgaagatgaatggagcaacctaaga
ttgccttcgtgcgggaattttttcatccgaatgaatttcccaaagcttgttgaccagctc
agagcacaagataaattaccagccttagtgttcagctttgaccgtgtgatgtgccaaagg
ctgtccgagcgacttactatggaatttgaagaccgagaagcagatataagagcacgagac
ggccaaagagccttaaaacgtgctgagagaaggcgagcaaaagctgaaaagaaactgaaa
aagacaagagatgaaacggagaaagaaaaagcgcaaagaatagctaaccagcaagatgaa
ggagatggggaagacttttcagctttggatgaacctttgccagaatgcacggtggcattt
aggcacggaattggaaagcaggacatgaataagataatggatcgcatgcggttcgttaaa
agccgaaacatatttaggcggatctggaaacgaggagtcagctaccatcatgctggcctt
ggtaacaaagaaaggtcctgcgtggaaatgctgtttaggaagaaatatcttcaggtcgta
gcagcaacaggaaccttggcgcttggtatccacatgccttgcaagacagttgtgttcgct
ggagactcacctttcttaaactcactgcagtacagacagatgtctggcagggcgggtcgt
agaggttttgacccagtgggaaatgttgtgttttttggagttcctcaccggaaggtccaa
cgcctcatcacagctaacataccgaaacttgtcgggaactttcccatcaatgtatctctg
gtactgcgcctgctcctgatgacatcaaaaggaggcgacgagaaagacgcactgacaaag
gctctaacattgctttctcacccattcatctgccaaaaacacccggaaatgaagaatcag
atcaagaaacattttctcttcagcgtcgagctccttgctagattaagtcttataaataat
gagactggagctcctcaagagatggccggacttgctactcatcttcattatcacgaaccc
tccaactacgtcttggtcagttttttgcaaagcgggctctttcatgatctttgtcaacca
ggattaaaaggtaagggcaagttttctgaagatgtcatgaggaaaatggttcttattctg
agccacttgtttggtagaagattccttcacccttctttcaagcgaagaatccacttgtgc
ccgacgtcaaaagtaattttggaagatcttcccgatgaatttgcgaacgcaattcaagat
tacaaccgtaaggttacggaagtcttcagccaatacctccaaactgtggccgcggaactc
gaaaaggaccggggagaggaaaaaaaactccctttatcaggcatagaatttccagatacg
acgagcattaccgaccttgtcgaaaacgacaccatcaaaagtcttgcacgctcttccatt
gcctactctgcatgttcgtcatttgctgcactgtcagggaattcagacctacatttgcat
tctactgaccaaaaaacagctgttcactgggaaaggtgggaaagggaagaaagtgttgct
gacggaagggaggaaaatgaagacgaatctgacagtgacgaagaagatgaggcagagcat
cgtgagccaattgaacatttgttgaagattattcgtcaagatgtctacacagatatgaat
gtcgttcccattcttcctctgaaggaagccagctccggcggacgtgttctgcacctgaac
gcttatgcattggatttctttaaacacggatccgagaaagttatcgagaaagagaatgga
atcaaggccggcgaggttttctcgttgctgagggacttttatctcaccattaaatcaatc
agttgttctttggaagaacttggacccgaagatgacgatgttgtactcgcctttaagcag
ttggcccgcgagtttggggagaagttcaacaatcagttcaattcagacatgtga
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integrated database retrieval system
