Acropora digitifera (stony coral): 107331153
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Entry
107331153 CDS
T04352
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
adf
Acropora digitifera (stony coral)
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adf03016
]
107331153
Enzymes [BR:
adf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107331153
Transfer RNA biogenesis [BR:
adf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107331153
Prokaryotic type
tRNA splicing ligases
107331153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
107331153
NCBI-ProteinID:
XP_015751192
LinkDB
All DBs
Position
Un
AA seq
443 aa
AA seq
DB search
MASAHRSYKEECSFIERLDQSSFRIKKGFVPNMKVEGIFYINDHLEKLMFDELKHWAGTQ
GVGGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMSLSEAVVSPGGVG
FDINCGVRLLRTNLHERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALSMGMD
WSLREGYAWAEDKEHCEEYGRMLQADPSKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEI
FNSHAAKKMGVDHEGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIEVNDRQLACAR
ISSQEGQDYLKGMAGAANYAWVNRSTMTFLTRQAFAKIFKSNPDDLDMHVIYDVSHNIAK
IEEHILDGVQKSLLVHRKGSTRAFPPHHPLIPVDYQLIGQPVLIGGTMGTCSYVLTGTEG
GMRQTFGTTCHGAGRALSRAKSR
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgctcatcgcagttacaaagaagagtgctccttcatcgaacgcttggaccaa
agttcttttcgtatcaagaagggttttgttcccaatatgaaggttgaagggatattttat
atcaatgatcatctggagaagcttatgtttgatgagttgaaacattgggctggaacacaa
ggtgttggagggtttctaccaggtgtcaaacaaattgcaaatgttgcagctttgccagga
attgttggtaaatcagttgggttacctgatgttcattctggctatggatttgctattgga
aacatggctgcttttgacatgtctctatcagaagcagttgtatcaccaggtggtgttggt
tttgatattaactgcggtgtgcgtctcctgagaacaaatcttcatgagagagatgttcag
ccagtaaaggaacaacttgcacagtcactatttgatcacattcctgttggcgttgggtca
aaaggtgtcattcctatgggagcaaaagatttggaagaagctctctcaatgggaatggac
tggtctctcagagaaggatatgcgtgggccgaagacaaagaacactgtgaggaatatggc
cgcatgttgcaagctgatccttccaaagttagcccgagagcaaagaaaaggggcttacca
cagcttgggacgcttggtgctggaaatcattacgcagaaatccaagttgtcgatgaaata
ttcaactcacacgcagctaaaaagatgggcgtggatcacgaaggacaggtttgcgtcatg
atacacagcggaagtagaggcctgggacatcaagtcgctactgatgctttagttgcaatg
gaaaaagcaatgaaaagggacaaaatcgaagtcaacgatcgacagctcgcatgcgcaagg
atcagttcacaagaaggccaagattacctcaaaggcatggcgggagctgctaattacgcc
tgggtaaatcgctccactatgacattcctgacaaggcaagcttttgcaaaaattttcaag
agtaacccggatgatctcgacatgcacgtgatctatgacgtgtcacacaatattgcgaaa
atagaagagcatatcttagacggcgttcaaaaatctctccttgttcaccggaaaggctca
acgcgggcgtttccgccccatcatcctctcattcctgtagattatcagttgatagggcag
ccagttcttatcggtggaaccatggggacttgcagttacgttcttacgggaactgaggga
ggaatgaggcagacgtttggcacaacatgccatggagcgggtagagctttgtccagagca
aagtcgcggtga
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