Acropora digitifera (stony coral): 107331565
Help
Entry
107331565 CDS
T04352
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107331565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
adf03041
]
107331565
Enzymes [BR:
adf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107331565
Spliceosome [BR:
adf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107331565
Complex C
U4/U6.U5 tri-SnRNP related factors
107331565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
PWI
DEAD
AAA_19
SRP54
T2SSE
nSTAND3
AAA_30
TsaE
Motif
Other DBs
NCBI-GeneID:
107331565
NCBI-ProteinID:
XP_015751658
LinkDB
All DBs
Position
Un
AA seq
1009 aa
AA seq
DB search
MAELSTWVSDKLHDVLGFSDKYTVEYLIGLAKSSTSPESLVQRVSEGLNVDDKVATFASE
LWSKFPHATGPAEHPYRAKERALIEQRQKYMGYALLSDDDDDDKVIKTNESKKDRKRKHL
RRKTESSSSDEDSLRGNDASKAVGNDSDSDEWEKEEKERKKDLEERDAFANRLKQKDKEK
TRNILERSDKKVFVEKSRTPIEEKFRAKSIPDLRKKARREYVKKRRVDKLEMLQEDIRDD
EYLFEESQLSKREKKEKEYKKKVYNLALEHAKAGGLEKVQRYEMPQENQKPAKYDEETVE
ELGPNYEQKKWEEDKLGYAVMKFGAKDAKHKSKAKDYDLVVDEDQINFVMAEQIPGTKEK
QEPEMNEYQKKRLTIEETQKSLPVYPYKEDLIQAIRDHQVIIIEGETGSGKTTQIPQYLH
EAGFTKNKMKIGCTQPRRVAAMSVAARVSEELGTKLGNEVGYSIRFEDCCSERTIIKVCV
LIIDEAHERTLHTDVLFGLVKDITRFRSDLKLLISSATLDADKFSQFFDDAPIFRIPGRR
FPVNIYYTKAPEADYLEAVVVTVLQIHVTQPTGDILVFLTGQEEIEASQELLQERTRKLG
SKIKELIILPIYANLPSDLQAKIFEPTPPGGRKVILATNIAETSLTIDGIIYVIDPGFCK
QKSYNPRTGMESLVVTPISKASANQRAGRAGRVAAGKCFRLYTAWAYKNELEENTIPEIQ
RTNLGNVVLLLKSLGINDLIHFDFMDPPPAETLIIALEQLYALGGLNHHGELTKLGRRMA
EFPVDPMLSKMLIASEKYKCVEEILTITAMLSVNNAIFYRPKDKVVHADNARVNFFRAGG
DHLTLLNVYDQWAETGYSTQWCYENFIQHRSMKRARDVREQLEGLMERVEIEITSNPHDS
VPIRKAITAGFFYHTARLGKSGQYRTVKHQQTVMIHPNSSLFQEQPRWVIYHELVFTTKE
FMRQIIEIENKWLLEVAPHYYKAKEIEDSSSKKMPKTAGVTKEQARSTT
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcggagttatcaacttgggtatcagacaagctgcacgatgttctcggcttctcagat
aagtacactgtggaatacctcataggacttgccaaaagctcaacaagtcctgaatctttg
gttcagcgagtatctgaaggcttaaatgtcgatgataaggtggcaacatttgcttcagag
ctatggtcaaaattccctcatgcaactggacctgccgagcatccttacagggcaaaagaa
agggctctgatcgagcagaggcagaagtatatgggatatgctttattatcggatgatgat
gatgatgacaaagtgattaaaactaatgaatctaagaaggatcgaaaacgaaaacattta
agaaggaaaacagaatcttctagttcagatgaggattccctcaggggtaatgatgcgtca
aaagcggttggcaatgatagtgattcagatgaatgggaaaaggaggagaaagaaagaaag
aaagaccttgaagagagggatgcttttgccaacaggcttaagcaaaaggacaaagagaag
acaaggaacatattggaaagatcagataaaaaggtatttgtagaaaaatccagaacccca
attgaagaaaagttccgagctaagagcattcctgatcttaggaagaaagcccgccgtgag
tatgtcaagaaacgaagggttgacaagcttgaaatgcttcaagaggacattcgagacgat
gagtatctgtttgaagagtctcagctcagtaaaagggaaaaaaaggaaaaggaatacaag
aaaaaggtttacaacttggctttggagcatgccaaagctggaggacttgagaaagttcaa
cgatatgaaatgcctcaggagaatcaaaagccagccaagtatgatgaagaaacagtggaa
gagctgggacctaattatgagcaaaagaaatgggaagaggataaacttggctacgctgtc
atgaaatttggtgcaaaggatgccaagcataagagtaaggccaaagattatgatttagtt
gttgacgaagaccaaataaattttgtaatggctgagcagattccaggaacaaaggaaaaa
caggaaccagaaatgaatgagtatcagaagaaaagattgacaattgaagagactcaaaag
agtttaccagtatatccatacaaagaagacctcatccaggctatcagggaccatcaggtg
attattattgaaggagagactggatcaggcaaaactactcagattccacagtatcttcat
gaagcaggttttactaaaaataagatgaaaattggctgcacgcagccacgtcgagtggcg
gccatgagtgttgctgcaagagtgtcagaagaactgggaacaaagctgggaaatgaggtt
gggtacagcatacgatttgaagattgttgttccgaacgaactataataaaggtgtgcgtc
ttaatcattgatgaagctcatgagcgcaccttacatacagacgtcttgtttggtttggtg
aaggacatcactcgtttcagaagtgaccttaaactgcttatatcaagtgcaacgctcgat
gccgacaagttctctcagttctttgacgacgctcctatctttagaatccctggtcgacgt
ttcccagttaacatctattacactaaggctccggaagctgactatctggaggctgttgtg
gtcacagtgttacagattcatgtgacgcagcccacaggtgacatcctggtatttcttacc
ggccaagaagagatcgaggcttcccaggagctcttgcaagagagaacgcgcaaactgggt
tcgaagattaaagagcttattattctaccaatctatgctaacctgccttcagatttacaa
gccaagatatttgagcccacccctcctggggggagaaaggttattttggccacaaatata
gcggagacatctttgacgattgatggaatcatttatgttattgatcctggattctgtaaa
cagaagagctacaatccgcgcacaggaatggagtccctggtggttacgcccatctcaaaa
gcctcagccaatcagcgtgcaggtcgtgcagggcgtgtagccgctggcaaatgctttcgg
ttgtacaccgcgtgggcttacaaaaacgaactggaggaaaatactatacccgagatccaa
agaacgaatttggggaatgttgtccttcttcttaagagcttgggcatcaatgatttgatt
catttcgatttcatggacccacccccagcagaaaccttgattattgctcttgaacagctg
tatgctttaggaggactgaatcaccacggggaactgaccaagcttggacgtcgcatggcc
gagtttccggttgatccaatgctgtccaaaatgttaattgcatcggagaaatacaaatgt
gtggaggagattcttacaatcacagccatgctgtctgtcaacaacgccatcttttaccgt
cccaaggataaagtcgtacacgcagacaacgcgcgcgtgaattttttccgcgctggaggt
gatcacctgacgctgttgaacgtatatgaccagtgggcggagactgggtactcgacgcag
tggtgttatgagaattttattcaacatcgctccatgaagagagcacgtgatgtcagggag
cagctcgagggactaatggagagagtagagattgagatcacttccaatcctcatgactcg
gtgccgattagaaaggcaatcaccgcaggattcttctatcacacagctaggctcggcaaa
agcggtcagtacaggacagtcaaacatcagcagacggtcatgattcacccaaatagcagt
ttattccaggagcagcccagatgggtgatttaccacgagcttgtgtttacgacgaaggag
tttatgagacagattatagagatcgagaacaagtggcttctagaggtggcaccccattac
tacaaagccaaggaaattgaagacagttcgagtaagaaaatgcccaagacggcgggagtg
acgaaagagcaggccaggtcgacaacgtga
DBGET
integrated database retrieval system
