Acropora digitifera (stony coral): 107332912
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Entry
107332912 CDS
T04352
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107332912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107332912
03041 Spliceosome [BR:
adf03041
]
107332912
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107332912
Spliceosome [BR:
adf03041
]
Complex B
Other components
Prp19-related factors
107332912
Complex C
107332912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_12
NRDE-2
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
107332912
NCBI-ProteinID:
XP_015753148
LinkDB
All DBs
Position
Un
AA seq
899 aa
AA seq
DB search
MANWGTCEEEDLPYEEEIIRSPYSVKFWMRYVEHKAKKGSNKALNLLYERALKELPGSYK
IWYLYLKERRRQVRGRPITDPAYEDVNNAFERSLVFMHKMPRIWIDYCQFLVDQCKVTRS
RRTFDRALRALPITQHTRIWPLYLKFVRKHHIPETAVRVYRRYLKLEQENTEEYIDYLKS
VGWLDEAAARLAFIVNKEEEDLPYEEEIIRSPYSVKFWMRYVEHKAKKGSNKALNLLYER
ALKELPGSYKIWYLYLKERRRQVRGRPITDPAYEDVNNAFERSLVFMHKMPRIWIDYCQF
LVDQCKVTRSRRTFDRALRALPITQHTRIWPLYLKFVRKHHIPETAVKVYRRYLKLEQEN
TEEYIDYLKSVGWLDEAAARLAFIVNKEKFVSKEGKSNHQLWQELCELISKNPDKIKSLK
VTDIIRGGLRRFSDSLGQLWNSLADFFIRSGHFEKDKHINIDMFPLNYILSQFLFLICSV
LLRQNPHNVHEWHKRVKLYEGKPNEIINTYTEAVQTVNPKLASGKPHTLWVEFAKFYEQY
GQLKEARLIFDKATKVNYRKVDDLAAVWCEFGEMEIRHENYKQALDLMRRATAMPSAKAD
YYDETETVQRRVYKSLKLWSMYADLEESLGTFQSTKAVYNRILDLRIATPQIVINFCTFL
EEHHYFEESFKIYERGVAMFKWPNVFDIWNTYLTKFIHRYGGKKLERARDLFEQVLEGCP
AKFAKSFYLMYAKLEEEHGLARHAMTIYERATKAVLPEEQFEMFNLYIKQAAEIFGVTHT
REIYEKAIEVLMDDQAREMCVRFADLERKLGEIDRARAIYMHASQMADPRTTPTFWKVWH
DFEVRHGNEDTFREMLRIKRSVQAQFNTQVNFMSAQMLAAAASKAAGASKENLNVLFVF
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggctaattggggcacttgtgaagaagaagatcttccatatgaagaagaaataatccgc
agtccttactctgtaaaattttggatgagatacgtagagcacaaagctaaaaaaggctcc
aacaaggcactgaatctactttatgaacgtgctctgaaggaactacctggaagctataag
atttggtatctttatcttaaagagaggaggagacaagtccgtggaagacctataacagat
ccagcatatgaagatgtcaataatgcatttgaaagatcattggtcttcatgcataagatg
cctcgaatttggatagattactgtcagttcttagttgaccagtgtaaagtgacaagatca
cggcggacatttgacagagctctgcgggctcttcccatcactcaacacactcgtatttgg
cctctttatctgaagtttgtccgcaaacaccacattcctgagacagcagtcagagtatac
agaagatatttaaagcttgagcaagaaaacaccgaagaatacattgattatctgaagtcc
gttggatggctagatgaagcagctgcacgtcttgctttcattgtcaataaggaagaagaa
gatcttccatatgaagaagaaataatccgcagtccttactctgtaaaattttggatgaga
tacgtagagcacaaagctaaaaaaggctccaacaaggcactgaatctactttatgaacgt
gctctgaaggaactacctggaagctataagatttggtatctttatcttaaagagaggagg
agacaagtccgtggaagacctataacagatccagcatatgaagatgtcaataatgcattt
gaaagatcattggtcttcatgcataagatgcctcgaatttggatagattactgtcagttc
ttagttgaccagtgtaaagtaacaagatcacggcggacatttgacagagctctgcgggca
cttcccatcactcaacacactcgtatttggcctctttatctgaagtttgtccgcaaacac
cacattcctgagacagcagtcaaagtatacagaagatatttaaagcttgagcaagaaaac
accgaagaatacattgattatctgaagtcggttggatggctcgatgaagcagctgcacgt
cttgctttcattgtcaataaggagaaatttgtgtcaaaggaagggaaatcaaatcatcag
ctttggcaagagctttgtgaacttatttccaagaatccagacaagatcaagagtctcaaa
gttactgatattattcgaggaggattgcgcagattttctgacagtttaggtcaactgtgg
aactcacttgctgatttctttattagaagtggacactttgaaaaggacaaacatatcaac
attgacatgtttccattaaactacattctgtctcaatttttgtttttaatttgtagtgtt
ctcttgcgtcaaaaccctcacaatgtccatgaatggcataaaagagtcaagctttatgag
ggaaaacccaatgaaatcatcaacacatatacagaagctgtacagacagttaaccccaag
ctggcatcaggcaaacctcacacattgtgggttgagtttgccaagttttacgaacagtat
ggccagctgaaagaggcccggttgatatttgacaaggcgacaaaagtgaattatcgcaaa
gtggatgacttggctgctgtgtggtgcgagtttggtgaaatggaaatcagacacgaaaat
tacaagcaggcacttgaccttatgagaagagcaacagctatgccatctgccaaagcagat
tactatgatgagactgaaacagtacagagacgagtctacaaatctttaaagctgtggtcc
atgtatgctgatctcgaggagagtttggggacctttcagtccacgaaggcagtgtacaac
cgcattttggatctgcggatagcaactccacagattgtaattaacttctgcacgtttctt
gaggaacatcactattttgaggaatctttcaagatctatgagcgtggtgtggcgatgttc
aaatggccaaatgtgtttgatatctggaacacgtacttgacaaaattcatccatagatac
ggtgggaaaaaactggagcgtgcaagagacctttttgagcaggttctcgagggctgtccg
gctaaatttgcaaaaagtttttatttgatgtacgccaagcttgaggaggaacatggtctt
gctcgtcatgctatgacaatatacgagagagcaaccaaagctgttttaccggaggaacag
tttgaaatgttcaacctgtatattaagcaagcagcggaaatttttggcgtgacacacact
cgcgaaatctacgagaaagccattgaagtgctaatggatgaccaggccagagagatgtgc
gtaaggtttgctgatctcgagcgtaaacttggagagatcgaccgggccagagcaatttac
atgcatgcttcacagatggcggacccgcggaccaccccgactttctggaaagtgtggcat
gacttcgaggttcggcatggaaacgaggatacgttccgcgaaatgttacgaatcaaaagg
agcgtgcaggcgcaattcaacacacaggttaacttcatgtccgcgcaaatgttggcagca
gccgcaagcaaagccgccggagcaagtaaggagaatttaaatgtcctgttcgtgttttaa
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