Acropora digitifera (stony coral): 107334791
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Entry
107334791 CDS
T04352
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107334791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107334791
03400 DNA repair and recombination proteins [BR:
adf03400
]
107334791
Enzymes [BR:
adf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107334791
Messenger RNA biogenesis [BR:
adf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
107334791
DNA repair and recombination proteins [BR:
adf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
107334791
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DUF6003
Cas3-like_C_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
107334791
NCBI-ProteinID:
XP_015755247
LinkDB
All DBs
Position
Un
AA seq
569 aa
AA seq
DB search
MSGRSVPDTFLEGVKYALGEVGRATITLKPKQEEILKIIALKQKDVLAVLPTGYGKSLIY
QIIPPLMDYMDSGQRPTQKKSIVLVVSPLNALIRDQVTKLKQSGLKACILKGDRVEGDEE
ERKEEQEGLAFSAIENLREFQLIFAHPEALVGNKNVIRLLKTTEFKNRIKVIVVDEAHLV
VDWKNFRPSYGKLATIGSILPQVPLLGLTATATKKTRTDIIESLGMVNPVEILGNPDRSN
ISFSSSSRPDRGEDKLNEILVPLVESLKKERTKFPFTVVFGTLETISSCYSFFSQAMGKE
QYEPIDALPKAENRLFTQFHAQYPPQEKERIIDGLILGKSKLRIVFATVAFGVGLDLKDI
RQIIHIGLPCTMEEYFQEAGRAGRDGLPSTAHIYYNSYDTSKARKHLSSVMRDYVQSKKC
KREIIMEYFGFSPLPLDTAHACCDYHEKLCSCDDCVLSGVASLMAPTLTDQVPPLSNEEV
YRYPKLNMEQVAKLNEELVKFRLSLPGHGRTIVGSSSLSSGVTIKLIHEVAENAHTFSSA
EDIEKRLPFFSQSHAISIWKIVERFLKKV
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagaagtgttccagataccttcctggaaggcgtgaaatacgcattaggagaa
gttgggagagcaactataacactcaaaccgaaacaagaagagattctgaaaataatcgct
ttgaaacaaaaagatgttttagctgttctcccaactggttacggaaaatcgttgatatat
caaataattccacccttgatggattatatggattctggccagagaccaacccaaaagaag
tctattgtcttggtggtgtcaccgctcaatgccttgataagggatcaagtaacgaagtta
aagcagagtggtctgaaagcgtgtattttgaaaggtgatcgagtggaaggagacgaagaa
gaaagaaaagaagagcaagaagggttggcattcagtgcaatagaaaacttgagggagttt
cagttaatttttgcacacccggaggcccttgtaggcaataaaaatgtcattaggctcctg
aagacaacagagtttaaaaatcgtatcaaagtcatcgttgtggatgaagcacatctcgtt
gttgactggaagaattttagaccgtcctatgggaagctggcaacaataggaagcattctt
ccacaagttccattgcttggtctcacagccactgctaccaaaaagaccagaactgacatc
attgagtccctgggcatggttaatccagttgaaatccttggaaaccctgaccgatcaaat
atttctttctcatcatcctccagaccagacagaggagaggataaactaaatgaaatattg
gtccccttggtggaaagcttaaagaaagagagaacaaagtttccttttactgttgttttt
ggcacattagagaccatttcatcttgttatagctttttcagccaagcaatggggaaagag
cagtatgaacctatagatgccctgcccaaggccgagaacaggttatttacacaatttcat
gcccaatacccacctcaagaaaaggaaagaataattgatggccttatcttggggaagtct
aaactcaggatcgtgtttgcaacagttgcatttggtgttggtctggacttaaaagacatt
agacaaataattcatataggcctgccctgtacaatggaagagtactttcaggaggctggt
agggccggtagagatggtcttccttctacagctcacatctactacaattcatatgacaca
tcaaaggcaagaaaacatttgtcttcagtaatgagggattatgtgcaatcaaagaagtgt
aaaagagagattattatggagtattttgggttttcccctctgcctcttgacacagctcat
gcttgttgtgattatcatgagaaactttgtagctgtgatgactgtgtgctctctggtgtt
gcatctttgatggctcccaccttgacagatcaagtccctccattatctaatgaagaagtt
tatcgttatcccaaactaaacatggagcaagtagccaaactaaatgaggaacttgttaaa
tttagactctcgttacctggacatggtagaacaatagtagggagttcaagcctaagcagt
ggtgttaccataaagttaattcatgaagtagcagaaaatgcacatacattctcttccgca
gaagacattgaaaaaagacttcctttctttagccaaagtcatgccatttcaatatggaaa
attgttgaacgattcctaaagaaagtgtga
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