Acropora digitifera (stony coral): 107336064
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Entry
107336064 CDS
T04352
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03020
RNA polymerase
adf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107336064
09124 Replication and repair
03420 Nucleotide excision repair
107336064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adf03021
]
107336064
03400 DNA repair and recombination proteins [BR:
adf03400
]
107336064
Enzymes [BR:
adf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107336064
Transcription machinery [BR:
adf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107336064
DNA repair and recombination proteins [BR:
adf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107336064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
RNA_pol_Rpb1_7
RNA_pol_Rpb1_1
RNA_pol_Rpb1_6
Motif
Other DBs
NCBI-GeneID:
107336064
NCBI-ProteinID:
XP_015756612
LinkDB
All DBs
Position
Un
AA seq
1317 aa
AA seq
DB search
MLQYHVATFVDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRVRGNLMGKRVDFSARAVIT
PDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNGERVD
LRFHPKPSDLHLQFGYRVERHIRDDDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLNLSV
TTPYNADFDGDEMNLHVPQSLEARAEITEIMMVPRNIVTPQSNKPVMGIVQDSLMAVRRF
TKRDVFLEKDTMMNLMMWIIDWDGKIPQPAILKPKPMWTGKQVFSMIIPGNVNMVRTHST
HPDDEDSGPYKHISPGDTKVLIEHGELISGILCKKSLGTSSGSLVHIVAVELGHEVARLF
YGNIQTVVNNWTLIEGHSIGIGDCIADSETYDEIQRVTKKAKKDVIDVIEKAHNDALEPT
PGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEYNNFKAMVVSGSKGSKINISQVIAVV
GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLI
DTAVKTSETGYIQRRLIKAMEGLMVAYDGTIRNSNNQLIQLRYGEDGMDGAAVEFQNMPS
IKPNNVAFEKKFHFDCTSERRLRRHLQEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNND
DAKYQDEEEQLDKMDDDVFLRCIEANMLTDMTLQGIEAISKVYMNLPNEDNKKRVTITEE
GEFRHIPEWILETDGVALMRVLSEKNIDPVRTTSNDICEIFSVLGVEAVRKAVEREMNHV
ISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRCSFEETVDVLMDASSH
AEVDTLRGVSECLILGKLPRLGTGSFDLMLDAEKCKFGMEIPTNIMGPGMMGGPLSGTGM
FFGAAGSPTAKSPQMTPWNMGATPAYLDAWSPGMGSGMTPGAAGFSPAGSEASGFSPGGF
SPAWSPQPQSPASPGPSSPYIPSPVAASPNYSPSSPAFMPSSPSMSPASPSYSPTSPGYS
PSSPSTGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPS
SPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPTSPSYSPTSPSY
SPTSPSYSPSSPSYSPTSPSYSPQSPSYSPSSPSYSPSSPKYSPTSPSYSPTSPKYSPTS
PTYSPTSPSYSPSSPKYSPSSPSYTPSSPTYSPTSPTYSPSSPRYSPTSPQYTPSSPQYS
PSSPQYSPTSPHYSPTSPTFTPVSAQYSPSSPKYSPAGSGPSPSPQYSPSSPRYSPS
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaataccatgttgcaacatttgttgacaatgaaattcctggcttgccaagggcc
atgcagaaatctgggcgtccccttaagtcagtaaaacagagactgaagagtaaagaagga
cgagtcagaggcaatttaatgggaaaacgagttgacttctctgctcgagcggttattaca
ccagatcctaatctgtctattgaccaagttggtgttccacgaaccattgcacagaaccta
actttcccagagatcgtcacaccattcaacatagacagcatgcaagaacttgtgcgccga
ggcaacaaccaatatccaggtgccaagtatatcatcagggacaatggagagagggttgat
ttgaggtttcaccccaaaccaagcgaccttcatctgcaatttggatacagagtggaaagg
cacatcagagatgacgatgtcatcatcttcaatcgtcagcccactttgcacaaaatgtca
atgatgggacacagggttaaaatcttgccttggtccactttcaggcttaatctcagtgtc
accaccccatacaatgctgactttgatggtgacgaaatgaacttgcatgtacctcaatca
ctggaggcaagagcagaaataacagagatcatgatggtacccaggaacattgtaacaccg
cagtcgaataaaccagtcatgggaattgtacaggactctctaatggctgtcagaagattc
acaaagagagatgttttcctagaaaaggacacaatgatgaatctaatgatgtggattatt
gactgggatggcaaaattccacagccagctatcctcaaacccaaaccaatgtggacagga
aagcaggtctttagcatgattattcctggaaatgtaaacatggtccgcacacacagtacc
caccccgatgatgaagatagcggaccatacaaacacatatcacctggtgacacaaaggtt
ctgattgaacatggtgaactaatctctggtatattgtgcaagaagtctctgggtacttcg
tctggtagtttggttcacattgttgctgttgagctgggacacgaggttgcccgtctcttc
tatggcaacattcagactgttgtaaacaactggactctgattgaagggcacagcattggt
attggagattgtattgcagacagtgagacctatgatgaaatccagagagtcacaaagaaa
gccaagaaagatgtcatagatgttattgaaaaagctcacaatgatgcacttgagcccact
cctggtaacacactgcgtcagacatttgagaaccaagtgaaccgcatcctgaatgactgt
cgagacaagactggtggaagtgctcagaaaagcttgtcagaatacaacaactttaaagct
atggttgtgtcaggctccaagggatctaaaattaatatttcacaggttattgcagtggta
ggacagcagaacgttgaaggaaaacggattccatttggttttcgtcatcgcacgcttcct
cacttcattaaggatgattatggccctgagagtcgaggatttgtggagaattcctatctt
gctggactgactccaactgagttttactttcacgccatgggaggtcgtgagggattgatt
gacactgctgtgaaaaccagtgaaactggttacattcaaagacgtttgatcaaagctatg
gaaggtctgatggtagcttatgatggaacaatccgaaactcaaacaatcaattgatccag
cttagatatggtgaagatggaatggatggagctgctgttgaattccagaatatgccttca
attaaaccaaacaatgttgcttttgagaagaagttccactttgactgcaccagtgagagg
cgtcttcgtcgccatcttcaggaaaaaatcaaccttggatttggtgacgatctcaactgc
atattcaatgacgacaatgcggagaagcttgttctgcggatcaggattatgaataacgat
gatgccaaataccaagatgaagaagaacagcttgacaaaatggatgatgatgtattcctc
agatgtattgaagcaaacatgttgactgacatgacactgcagggaattgaagcaatttca
aaggtgtacatgaatctgccaaatgaagacaacaagaagagggtaaccatcacagaagaa
ggagaattcaggcacattccagagtggatcttagaaactgatggtgttgcactcatgagg
gttctaagtgaaaagaacattgatcctgtaagaacaacttcaaatgacatctgtgaaata
ttttctgttcttggagttgaggccgtgcgcaaggcagttgaacgtgaaatgaatcatgtc
atttcatttgatggttcttatgttaattaccgtcacttggctctgttgtgtgacatcatg
acctgccgtggtcatctgatggccatcacaaggcacggtattaatcggcaagaagttgga
gcgctcatgagatgttcctttgaagaaacggttgatgtgcttatggatgcttcctcgcat
gctgaggtagatactctgagaggagtcagtgaatgccttattcttggcaaactaccacgt
ttgggaacaggcagctttgatttaatgttggatgcggagaaatgtaaatttggaatggaa
attccaaccaatatcatgggacctggcatgatgggtgggcccttgtcaggcactggaatg
ttctttggtgctgcaggctctccaactgccaagtcaccacagatgacaccgtggaacatg
ggtgcaacgcctgcatacttagatgcctggagccctggaatgggtagtggcatgacacca
ggagctgcaggattttcaccagcaggttcagaagccagtggatttagcccaggtggcttt
agcccagcctggagccctcagccacaatctccagcatctccaggccctagcagcccatac
attcccagtccagtggctgccagtccaaattactctccttcaagtccagcgtttatgcca
agttccccctcaatgtcgccagcgagtccatcgtattcaccgacatcacccgggtactcg
cccagttcaccatcaactgggtactcaccagcaagtccaagctactctccaacctcgcca
tcttactcgccaacctcgccatcttactctcctacctctccatcttacagtcccacatct
ccctcttattctcctacatctccatcttattccccaacttcaccctcctacagtccttct
tcaccatcatattctcccagttccccatcttattctcccacatctccctcttattcaccg
acatccccgtcctattcgcctacttccccttcctactctccaacatcgccatcttattct
ccatcttctcctagttacagtccaacatctccgtcatattcccctacctctccttcctac
tctcccacttctccttcctattcaccttcatcaccttcctactcccccacttcccccagt
tattccccgcagtccccttcatattccccctcttcaccttcatattccccatcatcacct
aagtactcccccacctctcctagctactcccctacctcgccaaagtacagcccaacttca
ccaacctactctccaacttctccttcttattcgccttcgtcaccgaagtattccccttcc
tcaccatcttacactccttcctcgccgacttattccccaacttctccaacttactcgcct
tcttctccacgctattctcctacttcgcctcagtacactccttcttctccgcagtactcg
ccttcttctccacagtacagtcccacttcccctcattactcgccaacttccccaacgttt
acccctgtgtcagcgcagtacagtcccagctcgccaaaatatagtcctgcagggagtgga
ccgtcaccttcaccacagtattctccatcttcacctcgttactcgccatcttaa
DBGET
integrated database retrieval system
