Acropora digitifera (stony coral): 107339349
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Entry
107339349 CDS
T04352
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107339349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107339349
03036 Chromosome and associated proteins [BR:
adf03036
]
107339349
Enzymes [BR:
adf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107339349
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107339349
mRNA degradation factors
5'-3' decay
Decapping complex
107339349
Chromosome and associated proteins [BR:
adf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107339349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Flavi_DEAD
CMS1
AAA
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
107339349
NCBI-ProteinID:
XP_015760109
LinkDB
All DBs
Position
Un
AA seq
433 aa
AA seq
DB search
MATTKTEAVPSSLRSAGREGSEDDSWKANLKAPAKDRRIQTTDVTATKGNEFEDYLLKRE
LLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAYLIPLLEKCDSKKSHIQ
ALVLVPTRELALQTSQICKELGKHLGVQVMVTTGGTSLKDDIMRLYSDVHIIIATPGRIL
DLMRKGVAKVDSCQILVMDEADKLLSMDFKGFLEDIISFFPPSRQILLYSATFPVSVKEF
KDKYLEKAYEINLMEELTLKGITQYYVFLEERQKVHCLNTLFSKLQVNQAIIFCNSVQRV
ELLAKKITDLGYSCYYIHARMEQSHRNKVFHDFRQGETRTLVSSDLFTRGIDIQSVNVVI
NFDFPKNSETYLHRIGRSGRFGHLGLAINLITEENKFDLFRIEKELKTDIKPFPAVVDKK
LYVAEFQQQQEED
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacgaaaacggaagcagtgccatcctctctgcggtctgcaggaagggaagga
tctgaagatgactcatggaaggcgaatttgaaagctcccgcaaaggatagacgcatacaa
actactgatgttacagcgacaaagggaaacgaatttgaagactatcttcttaagagggag
ctactgatgggaatatttgagaaaggatatgagaagccttcccccatacaagaggagagc
attcctgtagctcttgctgggaaaaacattcttgccagagccaaaaatggcactgggaaa
acagctgcctatctgatacctctcctagagaaatgtgattccaaaaagtcacacattcaa
gctcttgtccttgtgccaacacgtgagctcgctcttcagacatcacagatatgcaaagaa
cttggcaaacacttgggagttcaagttatggtaaccacaggaggaacaagtctcaaagat
gatattatgagactctatagtgatgttcacatcatcattgccacacctgggcgcatacta
gatttgatgagaaaaggtgtggctaaagtggacagctgtcaaattcttgttatggatgag
gctgataaactattgtccatggactttaaaggctttttggaagacataatcagcttcttc
cctcccagccgacagatacttctttactctgctacttttccagtctcagtgaaagaattc
aaggacaaatatttggaaaaggcctatgaaattaatctgatggaagagctgacattgaaa
ggaattacccagtattatgtcttccttgaggaaagacagaaagtgcattgcctgaacact
ctgttctctaagcttcaagtgaatcaggctataattttttgcaactcagtccagcgtgtg
gaactgctggcaaaaaaaattacagatcttggttattcatgctactatatccatgctcga
atggaacaaagtcaccgaaacaaggtgttccatgacttcagacaaggggagacaagaact
ttagtttcgtcagatttattcactcgtggaattgacatacagtcagttaacgttgtcatc
aactttgactttccaaagaattcagagacgtatctgcatagaattggtcggtcaggccgc
tttggacatcttggtcttgccataaacctcatcactgaggaaaataaatttgatttattc
aggattgagaaggaattgaagacagatataaaaccattcccagcagttgtggacaaaaaa
ctctatgttgcagagttccagcaacaacaagaggaagactag
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