Acropora digitifera (stony coral): 107345440
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Entry
107345440 CDS
T04352
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107345440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adf03021
]
107345440
03019 Messenger RNA biogenesis [BR:
adf03019
]
107345440
Transcription machinery [BR:
adf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107345440
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107345440
U7-dependent histone pre-mRNA processing factors
107345440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
CPSF73-100_C
Lactamase_B_2
Lactamase_B_3
PAP-OAS1
Motif
Other DBs
NCBI-GeneID:
107345440
NCBI-ProteinID:
XP_015766646
LinkDB
All DBs
Position
Un
AA seq
517 aa
AA seq
DB search
MAAVAVKRKPDSIIPPEESDLMKITPLGSGQEVGRSCHVLEFKGXXFQLDCGIHPGMSGL
ESLPFLDEIDTAEIDLLLVSHFHLDHCGSLPWFLEKVRIQGCSYQIKQAQTLSFGLTSVC
MKHVNTSTVDVLYLLATRTGATIEFVIFQEKEVNGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSISPDVLIIESTYGTHIHEKREDRENRFTSTVHDIVNRG
GRCLIPVFALGRAQELLLILDEYWQNHPELHDVPIYYASQLAKKCMSVFQTYVNAMNEKI
KKQIAISNPFVFKHISNLKGIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNGVI
IAGYCVEGTLAKTLMSEPEEIASMTGQKIPRKCSIDYISFSAHTDFEQTSEFIRILKPPH
IVLVHGEQNEMGRLKAALIREYEDNPDASVVVHNPPNTQSVELYFRGEKMAKVMGSLAAE
KPEHGKPLSGILIKRGFNYHLIAPEDLQSDTKLSTFL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgttgccgtaaaaaggaaaccggactcaattattccacccgaagaaagtgac
ttgatgaaaattactccattagggtcaggtcaggaagttggtagatcatgtcatgtcttg
gaattcaaaggnnnnngtttccagttggattgtggtattcatcctggaatgtctgggctg
gagtctcttcctttccttgatgaaattgacacagcagaaattgatctccttcttgtgagc
cactttcatttggatcactgcggttccctgccctggtttctagaaaaggtacgcatacaa
ggatgcagctatcagataaaacaggcacaaacactttcctttggtctcacctcggtgtgt
atgaagcatgttaacactagcactgtagatgtgctttatctcttagccactagaacaggt
gctaccatagaatttgttatctttcaggaaaaggaagtcaatggtataaagttttggtgt
tatcatgcaggtcacgtgcttggtgcagcaatgttcatgattgaaattgctggcgtaaag
attctttatactggtgatttttcaaggcaagaagatcgccatctgatggcagccgagatt
ccaagtatctccccggatgttctcatcattgaatcaacttatggaactcacattcacgag
aaacgtgaggacagagaaaacagatttacaagtacagttcacgatattgtgaatcgtgga
ggacgttgcttgatccctgtgtttgcacttggaagagctcaggaattgcttcttattctg
gatgagtactggcaaaaccatccagaactacacgatgttccaatttattatgcatcacaa
ctggccaagaagtgcatgtcagtgttccaaacctatgtcaatgcaatgaatgagaaaatc
aagaagcagattgccatttctaatccgtttgtctttaaacacatttcaaaccttaagggc
attgatcagtttgatgacattgggccatcagtggtaatggccagtcctggaatgatgcag
agcggcttatctcgtgagctgtttgagcaatggtgtacagatcgcaggaatggtgttatt
attgctggatactgtgtggaaggaactctcgcgaagactttgatgtctgaaccggaggag
atagcatccatgactggacaaaagattcctcgaaaatgttccatcgattacatttcattt
tctgctcacactgatttcgaacaaaccagtgaatttattcgaattctcaagcctccacat
atagtgctggtccacggggaacagaacgagatgggtcgattaaaagctgctctcattcgt
gaatatgaagataatcctgacgccagtgttgtggttcataaccccccgaatactcagagt
gtggagctgtacttccggggggaaaagatggccaaggttatgggcagcttagctgctgaa
aaaccagaacatggcaagcctctctcaggaattttgatcaagcgagggttcaattatcat
ttaatcgcaccagaagatctgcaaagtgacaccaaactttctacattcctgtaa
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