Acropora digitifera (stony coral): 107347094
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Entry
107347094 CDS
T04352
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
adf
Acropora digitifera (stony coral)
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107347094
Enzymes [BR:
adf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107347094
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107347094
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107347094
NCBI-ProteinID:
XP_015768450
LinkDB
All DBs
Position
Un
AA seq
1322 aa
AA seq
DB search
MDDANACKSLDMASVADLMDGRFLHTLICLALEQTSKGLEGPSLPESVINEAETAWSKVV
ATVNNVHPSGSLESQFYPLFAERVKQPLLTADLEEGSYDLDPAGVKLQRLLEVENPLVNE
YAGDMRTKINTMAGDEDEDEVFNIGREFDELYHWHSLRPLSDDFDRTKADEDKPPDNLYK
RKRYFRMKQQYSSFLRFYGSSLVGGIDKAKIITVTETEAKKKVGKNKQEKMGKKAAQIIE
ENKQKGIELAKEKDQEKWHSILKEFKSNLKNENYDTALQVVEKYESKCKSPEFRFKALMK
RARGSFEAWKHTRTFKPNSNDMKYPVLLMDSVQKIAQDFQSLLRDKDKKRLARCIQNLGF
DDVAAMFWDLQPEMGKMAVQLSVHTTSARFQLKHMGHLLKRDERTDADPRVDHFIPDTWQ
RELLDAVDKNESAVIVAPTSSGKTYASYYCMEKVLRQSNDGVVVYVSPTKALVNQVIATV
YARFHRKKIPDGRAVYGVFTRDYRRNTLNSQILVTVPQCLEILFLSPRRQEWTKNVKYVI
FDEVHCLGEEDGAEVWEHLLLLIRCPFLALSATIGNPNDLMTWLQAAQDFRRQQDKQDKG
KLRNSYRIRLVTCEERYSDLEKSVYLPSPINGGFSKETFTYEKKYELKNSGEFVRLHPCA
QLGPKQLLENGFPGDMALTPGEALQLYDVMVEKWPDKESMQELSPEQYFLENKLIQKSHA
RQYELKVKEEFKSWADEKQSKKVQSVIQSLNSGCQEKQASTEDEWSALRLPSSGKLFIWL
NFPKLVDQLRAQDKLPALVFSFDRTMCEMLSKRLTEEFENREEDIRARDGHRALKRAERK
QAKAEKKLKKTRDETEKEKERRLAAQRDEEDEEDFSALDEPLPECTLAFTHGIGKQGMNK
IMNRIWFVKSQDIFRRALKRGVSYHHAGLGNKKRSCVEMLFRDKCLQALTLLSHPFICQK
HPEMESQIKKHFLFSVELLARLSLINIETGAPQEMAGLATHLHYHEPSNYVLVSFLQSGL
FHDLCQPGLKGKFSEHVMRKMVLILSHLFGRRFLHPSFKRRIHLCPTSKVILEDLPYEFA
EAIEDYNRQVTEVFSQYLKTVASELEKDRGEEKKLPLSGIEFPDTTSITDLVENDTIKSL
AHSSIAYCACSSFAALSGNSDLHLHYTDQKTAVHWERWEREESVGDGSEENEDESDCDEE
NEAEHREPIEHLLKIIRQDVYTDMNVVPILPLKEASSVGRVLHLNAYALDFFKHGSGKVI
EKENGIKAGEVFSLLKDFYLTIKSISCSLEELGPEDDDVVLAFKQLAREFGEKFNNQFNS
DM
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgcaaatgcttgcaagtcattagacatggcttcagtggcagatctaatggac
gggcgctttctccacactctcatctgccttgccttggagcaaacgtctaagggattggaa
ggccccagtttaccagagagtgttatcaacgaagcggagactgcttggagtaaagtggtc
gccactgtgaataacgtccatccttctggttcccttgaatctcaattttatcccttgttt
gccgagcgagtgaagcaacctttattgacagctgatctagaggagggaagttatgatcta
gaccctgctggtgtgaagctccagcgtcttcttgaggttgaaaatccgcttgtgaatgag
tatgctggggacatgaggacaaaaattaacaccatggctggagacgaggatgaagacgag
gtattcaacattggtcgggaatttgatgaactgtatcactggcattccctgaggcctctc
tctgatgatttcgacagaacaaaggcagacgaagataagcctccagataatctttataaa
agaaagcggtattttagaatgaagcagcagtactccagctttctaagattttacggcagc
tcacttgttggcggcatcgacaaagcaaagatcatcactgtcacggagactgaggccaag
aagaaagtaggaaaaaacaagcaagagaagatgggcaagaaggcagcacaaattattgaa
gagaataagcaaaaaggaatagagctagcaaaggaaaaagatcaagaaaagtggcattct
attttgaaggagttcaaaagcaacttgaagaatgaaaactacgatactgccttgcaggtg
gttgaaaaatatgaatccaagtgcaaatcacctgaatttcgtttcaaagcgctcatgaaa
agggcacggggctccttcgaagcctggaaacatacaagaacattcaaacctaactcgaac
gatatgaagtaccctgtccttctaatggatagtgtgcagaaaattgctcaagatttccaa
agtcttctcagagacaaagacaaaaagagacttgctagatgcatccaaaacctgggcttc
gatgacgttgcagccatgttttgggatttgcaaccagaaatgggaaaaatggccgtgcag
ctttctgttcacactactagcgcaagattccagctgaagcacatgggacatttgttgaaa
cgagacgagcgcacggatgctgatcccagagtggaccactttattccggatacttggcag
cgtgagctccttgatgccgtggataagaatgagtcagcggtaatcgtggcgccaacctca
tcgggaaagacctacgcctcttattactgcatggagaaagtgttaagacaaagtaatgat
ggtgtggtggtatatgtttcaccgacaaaggctttagtgaatcaagttattgccacagtc
tacgctcgttttcaccgcaaaaagatcccagacggacgagcagtgtatggtgtctttaca
agggattatcgacgtaatacattgaactcccagatccttgttacagttccgcagtgctta
gagatacttttcctctcgcctcgcagacaggagtggacaaagaatgttaaatatgtgatc
ttcgatgaggttcactgtcttggcgaagaggatggggcggaagtctgggaacatctcctt
cttctgattcgttgtcctttcctagctctctcagcgaccattgggaatccaaatgacttg
atgacctggttgcaagctgctcaagactttcgcaggcagcaggataaacaagataaaggc
aaactgaggaattcatacaggattaggctagttacttgcgaagagcgatactccgatctg
gaaaaaagcgtatatcttccaagtcccataaacggtggtttttctaaagagacgttcaca
tacgagaagaaatacgaacttaaaaactcaggagagtttgtgagacttcatccatgtgcc
cagctggggcccaaacagctgctggaaaatggttttccaggtgatatggctcttacacct
ggagaggctcttcaattgtatgacgtcatggttgagaagtggcccgacaaagaatccatg
caggaactttctccagaacaatatttcctggaaaataagttgattcaaaagagtcatgct
cgacaatacgagctcaaagttaaagaggaattcaagtcctgggccgacgaaaaacagtca
aagaaggtgcaatccgtgattcagtccttaaattccggttgccaagagaagcaggcttcg
actgaagatgaatggagcgcactaagattgccctcgtctgggaagctattcatctggctg
aacttcccaaagcttgttgatcagctcagagcacaagataaattaccagccttagtgttc
agcttcgaccgtacgatgtgcgaaatgctatccaagcgtcttactgaggaatttgaaaac
cgagaggaagatataagagcaagagacggccatagagccttaaaacgtgctgagagaaag
caagcaaaagctgaaaagaaactgaaaaagacaagggatgaaacagagaaagaaaaagag
cgaagactagctgcccagagagatgaagaagatgaggaagacttttcagctttggatgaa
cctttgccagaatgtacgttggcatttactcacggaattggaaagcagggcatgaataag
ataatgaatcgcatatggttcgttaaaagtcaagacatatttagacgggccttgaaacga
ggagtgagttaccatcatgctggccttggtaacaaaaaaaggtcctgcgtggaaatgctg
tttagggacaaatgtcttcaggctctaacattgctttctcacccattcatctgccaaaaa
cacccggaaatggagagtcagatcaagaaacattttctcttcagcgtcgagctccttgct
agattaagtcttataaacattgagactggagctcctcaagagatggccggacttgctact
catcttcattatcacgaaccctccaactacgtcttggtcagttttttgcaaagcgggctc
tttcatgatctttgtcaaccaggattaaaaggcaagttttctgagcatgtcatgaggaaa
atggttcttattttgagccacttgtttggtagaagattccttcacccttctttcaagcgg
agaatccacttgtgcccgacgtcaaaagtaattttggaagatcttccttatgaatttgcg
gaagcaattgaagattacaaccgtcaggttacggaagtctttagccagtacctcaaaact
gtggcctcggaacttgaaaaggaccggggagaggaaaaaaagcttcctttatcaggcata
gaatttccagatacgacgagcattaccgatcttgtcgaaaacgacaccatcaaaagtctt
gcacactcttccattgcctactgtgcttgttcgtcatttgctgcactgtcaggaaattca
gacctacatttgcattatactgaccaaaaaacagctgttcactgggaaaggtgggaaagg
gaagaaagtgttggtgacggaagtgaagaaaatgaagacgaatctgactgtgacgaagaa
aatgaggcagagcatcgtgagccaattgaacatttgttgaagattattcgtcaagatgtc
tacacagatatgaatgtcgttcccattcttcctctgaaggaagccagctccgtcggacgt
gttctgcacctgaacgcttatgctttggatttctttaaacacggatccgggaaagttatc
gagaaagagaatggaatcaaggccggcgaggttttctcgttgctgaaggacttttatctc
accattaaatcaatcagttgttctttggaggaacttggacccgaagatgacgatgttgta
ctcgcctttaagcagttggcccgcgagtttggggagaagttcaacaatcagtttaattcg
gacatgtga
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