Acropora digitifera (stony coral): 107354616
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Entry
107354616 CDS
T04352
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107354616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107354616
Enzymes [BR:
adf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107354616
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107354616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Motif
Other DBs
NCBI-GeneID:
107354616
NCBI-ProteinID:
XP_015776589
LinkDB
All DBs
Position
Un
AA seq
541 aa
AA seq
DB search
MEIVRSNFKESLNTVCEAIDSASLLAIDAEFSGLNVKWGAENCFDTPQERYSKLKEGCRD
FIIIQFGLCTFTWDTNQELYVAKPFNFYIFPKVWNRQCPDVRFLCQSSSIDFLTEHNFDF
NKLFREGISYLRPYEEQKLKEYFISRNTQDSFTSTSLLSPDHADETSEGSSQKPFRSVPP
EHKEFVEKACDTIEKMLKDPEEKVTQFPPCNGYLRKLIYQNVKQRFKAGIHMESSVNDKK
ERFIVVTKVSEDEKKKFEEDKLAKEEELVDNAVGFSQVVKMISQSGKLVVGHNMFLDLLH
VIEQFMCPLPELFDDLKATVRAVFPRLVDTKVMANTQPFRDLIPSSVLADLVKHVTTKPF
KKPGVMFDEGFSCYKNSQEKPHEAGYDAYITGMSFLSMVNYLGTFQTPPKANVSPDSSLV
VPFLNKIFVMKMEDIPYLNLAGPDLNPSRDHVFHLTFPCDWKQTDILDLFNRFGFVYISW
INSTSAFISLARREHASKVLDALEHEEECYTIVSYAEHRRQLYGSLEDEPRRTPFKRSRQ
M
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggagattgtacgttcaaatttcaaggaatctctcaatactgtctgtgaagcgattgat
tcagcttcgttgcttgccattgacgccgaattttctggtctaaatgtaaagtggggagcg
gaaaactgctttgatactcctcaggaacgctattccaagctaaaagaaggttgcagagat
ttcattataattcagtttggactgtgtaccttcacctgggataccaatcaggaattgtac
gttgccaagccgtttaacttttacatattccccaaagtttggaatcgacagtgcccagat
gttcgctttttatgccaaagttccagcattgattttctcactgagcacaactttgacttc
aacaagctttttcgagaagggatctcgtatttacgcccttatgaggaacaaaaactgaaa
gagtattttatttccaggaatacacaagactctttcacttcaacttcccttctctcccct
gaccatgcagatgagaccagtgaggggtcctcacaaaagccatttaggtctgttccccca
gaacacaaggaattcgttgaaaaggcatgtgacaccattgaaaaaatgttaaaagatcca
gaggagaaggttactcaatttcctccatgtaatggttatctgagaaaattgatttaccaa
aatgtaaaacaacggttcaaagctggaattcatatggaatcctcagtcaatgacaagaag
gaacgctttatcgtggtaactaaagttagcgaagatgagaagaagaaatttgaagaagac
aaacttgccaaagaggaagagcttgttgacaatgctgttggcttctcgcaggttgtgaag
atgatttcacagtctgggaagttggttgttggtcacaacatgttccttgacctacttcat
gtaatcgaacagtttatgtgccctcttccagaactctttgacgatctcaaagctactgtc
agagcagtatttcccaggcttgttgacaccaaagttatggcaaatactcagccctttaga
gatctcattccttcatctgtgctggcagatctggtgaagcacgtcacaaccaagccattc
aaaaagccaggggtgatgtttgatgaaggattctcttgttacaagaatagccaggagaag
cctcatgaggcaggctatgatgcttacatcactggcatgtccttcctttccatggtaaac
tacctaggaacattccagacccccccaaaagccaacgtatcaccagattcctccttggtt
gtaccatttttaaataagatatttgttatgaaaatggaagatattccttatctgaactta
gcaggccctgacctgaatccatctcgtgatcatgtgttccatttgacattcccatgcgat
tggaagcaaacagatattcttgacttgttcaataggtttgggtttgtttatatttcttgg
ataaacagcacctctgccttcatctcattggcacgaagagaacacgccagcaaagtgtta
gatgcattggagcatgaagaagaatgctacaccatagtttcgtatgctgaacacagaaga
caactgtatggttcacttgaagatgaaccacgcagaacacctttcaaaagatcaaggcag
atg
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