Acropora digitifera (stony coral): 107354814
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Entry
107354814 CDS
T04352
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
adf
Acropora digitifera (stony coral)
Pathway
adf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107354814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adf03019
]
107354814
03041 Spliceosome [BR:
adf03041
]
107354814
03009 Ribosome biogenesis [BR:
adf03009
]
107354814
03016 Transfer RNA biogenesis [BR:
adf03016
]
107354814
Enzymes [BR:
adf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107354814
Messenger RNA biogenesis [BR:
adf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107354814
Spliceosome [BR:
adf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107354814
Complex C
U4/U6.U5 tri-SnRNP related factors
107354814
Ribosome biogenesis [BR:
adf03009
]
Eukaryotic type
Pre-60S particles
Helicases
107354814
Transfer RNA biogenesis [BR:
adf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107354814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107354814
NCBI-ProteinID:
XP_015776797
LinkDB
All DBs
Position
Un
AA seq
997 aa
AA seq
DB search
MADSFGEDLFAVFEENPAPVINRKTENEKKVGDSSSATEDSEGTSKFGEKRQFKPDVIDL
ALDENEAKKAKFDDLDSFLETIPRVNVMSVETTEACTHEVAVPEGCEHVPLTKKPAKPAK
EYPFILDPFQKESLKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLQNKQRVIYTTPIKAL
SNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEVSYLAQTVMREVAWVVFDEIHYMR
DKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIAHLHKQACHVVYTDFRPTPLQH
YIYPAGGDGLFLVEDEKGEFREENFQKAMAVLREGGAESWNKRGRKGGTKGPSSCYKIVK
MIMERNFQPVIIFSFSKKECEAYALQMSKLDFNSAEEKKLVEEVFNNAIDCLSDEDKALP
QVEHVLPLLVRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFALGLNMPARTVVFT
NARKFDGKDFRFITSGEYIQMSGRAGRRGIDDRGIIILIIDEKMGPDVGKGLLKGQPDPL
NSAFHLTYNMVLNLLRVEEVNPEIMLEKSFCQFQNYASVPGMIDKLKALEAERDSFRIPN
EESITAYYRIRQQLKKLANDMLVSTEYFGVSSSLSSISINFLHSVFTCGNQRTLRMLIVI
TKCSPLYVIQALLNCSSKSVKSADGETPMPCGPDEKGEMQVVPILLHLVQAISAVRLYIP
KDLRSLDSRQGVGKSLQEVKRRFPDGLPLLDPIEDMGIKDNGLRSVVRKTEMLEHRMFTH
PLHKDSSLESLYGQYEQKAKVIAQIKLVKKELKKTKTILQLDELKCRKRVLRRLGYATAA
DVIELKGRVACELSRLVMHGQYYIHSDNVTCSCKFSINNMFKASQITILLXESARRIGKV
SEEAKLNINVETYVEKFKPNIMDVVFAWANGASFAHICKMTDAFEGSIIRAMRRLEELLR
QMCQAAKAIGNTELENKFAEGIIKIKRDIIFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagtttcggcgaagacctctttgctgttttcgaggaaaatccggccccagtt
atcaacagaaagacggaaaatgagaaaaaagtcggcgatagttcatctgcaactgaagac
tcggaaggtacctcgaaatttggcgaaaaaaggcagtttaaacccgatgttatcgacctt
gcgttggatgaaaatgaagcaaagaaggcaaaatttgacgatttggacagcttcttagaa
acaatacctcgcgtaaatgtgatgagtgttgagacgacagaagcatgtactcatgaggtt
gctgtccctgagggatgtgaacatgtccctttgacgaaaaaaccagctaagccagcaaag
gaatatccattcattttggatcctttccagaaagaatcgctgaaatgcttggaaaacaac
caatctgttttggtgtctgcacatacatctgcaggaaaaacagttgttgctgagtatgcc
attgcgatgtcgctgcagaacaaacaaagggtcatctatacaacacctattaaggctctt
agtaaccaaaaatacagagaattgtacgaagaattccaggatgttggcttgatgacagga
gatgtgactatcaaccccagcgctagtgcacttgtcatgacaacagaggtaagttacttg
gcacaaactgtaatgagggaagtagcttgggttgtctttgatgaaattcactacatgaga
gataaagagcgtggtgttgtgtgggaagaaaccatcatacttttacctgacaatgttcat
tacgtctttttatctgccacaattccaaatgccagacagtttgctgaatggattgctcat
cttcataaacaggcttgtcatgttgtgtatacagatttccgacccacacctcttcagcat
tatatttatcctgctggtggtgatggcttgttccttgtggaggatgagaagggggagttt
cgggaagagaatttccaaaaagccatggctgtgttaagagaagggggagcagagtcttgg
aataaaagagggcgcaaaggtggaaccaaaggtccatcaagctgttataaaattgtgaaa
atgataatggaaaggaattttcaacctgtcatcattttcagcttcagcaagaaagaatgt
gaagcatatgctctgcagatgtccaaacttgatttcaattcagctgaggagaaaaagctt
gtggaagaagtctttaacaacgccattgactgtttatccgacgaggacaaagcgctccct
caggtagaacatgtccttccccttttggttcgtggtattggtatccatcactcagggctt
ttgccaattctaaaggagacaattgaaatcctattctcagagggactgatcaaggctctc
tttgccacggaaacttttgctcttggtctcaacatgccagcaaggacagttgtgtttaca
aatgctaggaaatttgatggcaaagatttccgatttatcacttcaggagagtacattcaa
atgagtggcagagctggaaggcgtggcattgatgacagagggatcattatcttgatcata
gatgagaaaatgggtcctgatgttggaaaaggactgcttaagggtcaacctgatccgctt
aacagtgctttccatctcacatacaacatggtgttgaacttgctgcgtgtggaagaagtg
aatccagagatcatgttggagaagtccttttgccagtttcagaactatgcttcagtgcca
ggaatgatagacaaactgaaagctttggaagcggaaagagactcatttcgaatcccaaat
gaagaatctatcacagcttattataggatcagacaacagctgaaaaaactggccaacgac
atgcttgtgagtactgaatactttggtgtcagctcatcactttcgtcgattagcatcaac
tttctccattcagtattcacttgtggaaatcaaaggaccttgagaatgttgatagtgatc
acaaaatgtagtccgttgtatgtaatacaggcactgttaaactgctctagcaaatcagtt
aagtctgctgatggggaaacaccaatgccatgtggaccggatgaaaaaggcgaaatgcag
gtcgtaccaatcttgttgcatctggtccaagccataagtgccgtgagactgtatattcct
aaagacttaagatcactggacagcagacagggtgttggaaaatcactgcaggaagtgaag
cgtcgattcccagatggtcttcccttgctggatccaattgaagacatgggaatcaaagat
aatggattgagatcagttgttaggaaaacagagatgttggagcatcgcatgtttactcat
ccgcttcacaaagactcttcgttggagtcactgtatggtcaatatgaacaaaaagcaaag
gtaattgcacaaataaagttagtgaaaaaagaattgaagaagacaaagacaattcttcaa
cttgatgaactcaagtgcagaaaacgagtccttagaagactaggatatgcaacagctgca
gatgtgatcgaattgaaagggcgtgtagcatgtgagctgagcaggttggtaatgcatgga
caatactacatacatagtgataatgtaacatgcagttgtaagttcagcataaacaacatg
ttcaaggcttcccaaatcactattttgctataggagtcagcacgtcggattggaaaagta
tcagaagaagctaaactcaacattaatgtggaaacttatgtggagaaattcaagcccaat
attatggatgttgtgtttgcttgggcaaatggcgcctcatttgcacatatctgcaaaatg
actgatgcttttgaaggaagcattataagagctatgcgacgtttagaggaacttttgagg
caaatgtgccaagctgccaaggctattggcaacacagaactggagaataaatttgcagaa
ggaattatcaagatcaaaagagacatcatttttgcagccagtttgtacctttaa
DBGET
integrated database retrieval system
