Ammonifex degensii: Adeg_1618
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Entry
Adeg_1618 CDS
T00994
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
adg
Ammonifex degensii
Pathway
adg02020
Two-component system
adg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
adg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Adeg_1618
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Adeg_1618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adg03021
]
Adeg_1618
Transcription machinery [BR:
adg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Adeg_1618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
Sigma70_r4
Sigma70_r4_2
HTH_23
HTH_11
HTH_AsnC-type
HTH_29
HTH_IclR
HTH_17
HTH_38
MarR_2
LacI
HTH_3
HTH_20
Death
HTH_24
HTH_36
HTH_Tnp_ISL3
HTH_21
TetR_N
MarR
HTH_5
HTH_12
Phage_CII
GntR
Motif
Other DBs
NCBI-ProteinID:
ACX52712
UniProt:
C9R8T3
LinkDB
All DBs
Position
complement(1604370..1605731)
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AA seq
453 aa
AA seq
DB search
MVTKADIRLETAQKLAFRPELQQAVAVLQFSTQELWQYVQQQLTENPLLELKEEGEGGEP
PEEEASEDSWVDYLCDASDLGLSQQEPASSPEPVPVAPGPSLYEHLLQQLAFLPLNSTER
AVAEFLAGNLDQDGYLRLPLAEAASLLGISEEAVARGLKVLQSLEPPGVGARDLRECLLL
QLERSHPEDHLARKLVGEHLEELAEGEWAKLVRKLGVSQEELDRAVERIRQLNPRPGSNF
GSNWVEYVVPDIVVQEVEGDYEVLLNESVYPRLVINSTYRDLLRHPQLGPEAKTFLQQRL
KQALWLIKNLEQRRLTLYRVAVALVEKQRSFFDQGLSGLKPLTLREIAEEIGVHESTVSR
AIANKYLQCSRGIFPLRFFFASGVSSSRGQEVAAQAVKWLIKQLIDKEDPAAPLSDQAIA
RELKRQGIELSRRTVAKYRMEMGIPNAAKRKSQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggttaccaaggccgacatccgactggagacagcccagaaactggcttttcgtccggaa
ctgcaacaagcggtggcggtgctgcagttctctacccaggaactttggcaatacgtgcag
cagcagctgacggaaaaccccttgctcgaactgaaagaggaaggggagggcggggaacca
ccggaggaagaagcttctgaggactcctgggtggattacctttgtgatgccagcgacttg
ggtcttagccagcaagaaccggcttcctcaccggagccggtgccggtggctcccggacct
tccctttacgagcacctgctgcagcagctggccttccttcccctgaatagcaccgagcgg
gcagtagctgaattcttggctgggaacctggatcaggacggttacttgcgtcttcctttg
gcggaggcggcttctcttctgggaatatccgaagaggcggtagccagggggctgaaagtc
ctccagtcgctggaacctcccggagtaggggcgcgcgatttgcgggagtgcttgcttttg
cagctggagcgcagccacccggaggaccacctggcccgcaagctggtgggagagcacctg
gaggagctggctgaaggagaatgggctaagcttgtccggaaactgggcgtaagccaggaa
gagttggaccgggcggtagagaggatccgccagctcaatccccgcccgggcagtaacttc
ggcagcaactgggtagagtatgtcgtccctgacatcgtcgtgcaggaagtggaaggggac
tacgaagtcctgctcaacgagtctgtctacccccgtctagtgatcaactctacctaccgc
gatctcctacgccatccccaactcggtcccgaggccaagactttcctgcagcaaagactg
aagcaggccctctggcttataaaaaatctggagcagaggcgcctgaccctttatcgggtc
gccgtggcgctagtagaaaagcagcgcagcttttttgaccagggcctctcaggtttgaaa
cccctcaccctccgagagatagcggaagagataggggtacacgagtctaccgtctcccgg
gccatagccaacaaatatctgcagtgttcccgggggatctttccccttcgctttttcttc
gctagcggggtcagcagtagccgggggcaggaggtggcagcacaggcggtcaaatggctg
atcaagcagttgatcgataaggaagatcctgctgctcctttaagcgatcaggcgatagct
agagaacttaaaaggcaggggatagagctttcccggcgcacggtggccaaataccggatg
gagatggggatcccaaatgcggcaaaacggaaaagccagtaa
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