Aeromonas dhakensis: CK627_13880
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Entry
CK627_13880 CDS
T05186
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
adh
Aeromonas dhakensis
Pathway
adh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CK627_13880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adh03400
]
CK627_13880
Enzymes [BR:
adh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CK627_13880
DNA repair and recombination proteins [BR:
adh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CK627_13880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASX11793
LinkDB
All DBs
Position
complement(2960927..2964391)
Genome browser
AA seq
1154 aa
AA seq
DB search
MMPMKLPALPAKAGQKSTLGQLTGSSLSLIAARLTEEAQRPVLLVTADTPSALRLEQELQ
YLLADKGCPVLLFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSSGVLIVPISTLMLRT
APRVYLDKYSLMVKSGQRLNLQQLRGRLAEAGYVAVEQVLEHGEFAARGSLLDLFPMGSS
SPYRIDFFDDEVDSIRPFDPETQRSSEPVKSVSLLPAREFPTDEAAIELFRGQYREQFEI
SRAEGSIYQEVSKGRWPAGIEYYLPLFFQQTASLFDHLPDNTLLLTVGEIYPAAQRFWND
IGQRYEDRRWDNTRPLLPPQQIYLPVEQLFAALGQYAAVRLQEAPTAGDAGQHDLPLSAL
PDLQLDHSKEQPLLALSQFLQGFAGRTLFAVESEGRREVLGDLLARIALQPKEFASLDAF
ITSKARHGLLVAPLERGFLLREPGQEELALITETELLGGKIRSKRQREKSKNLSSDAVIR
NLGELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTSLHLISRY
TGSDNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYAHRAARAGFAFKHDREAYRQFA
AGFPFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVMKEMAEGKVDIIIGTHKLL
GAELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPAKRLAIKTFVRQHEPAVVREAVLRELKRGGQVYYLHNDVESIEKCAADLAELVP
EARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQIESVGFTLYMEMLEQAVEALKHGKEPSLEQLMSQHTEVELRLPALLPD
DYIPDVNMRLSMYKRIASAADEQELRELKVELIDRFGLLPEPTKTLMELAAFRQRATALG
IRRVEMSERGGYLDFTQETRVNPAYLVKLLSEQPRIYKMDGPTRLRFQVPTQDRAMRLKL
VDGLLADLASHASP
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaatgaagctccccgccttgcccgccaaggcgggccaaaagtcaacgctcggc
cagctgacaggcagcagcctctcgctgatagccgctcgcctcaccgaggaggctcagcgc
cccgtcctgctggtgaccgccgataccccgagtgccctgcgcctcgaacaggaactgcag
tacctcttggccgacaagggctgcccggtgctgctgttcccggattgggagaccctgccc
tacgacaccttctccccccatcaggacatcatctcccagcggctcgagaccctctacaag
ctgccgcagatgagcagcggcgtgctgatcgtgcccatctccaccctgatgttgcgcacg
gcgccccgggtctatctcgacaaatacagcctgatggtgaagagcggccagcgcctcaac
ctgcagcagctgcgcggtcgcctggccgaggcaggttacgtggcggtagaacaggtgctg
gagcacggcgaatttgccgcccgcggctccctgctcgatctcttccccatgggcagcagc
agcccctatcgcatcgattttttcgacgacgaggtggactccatccgcccgttcgacccc
gagacccaacgctccagcgagccggtcaagagcgtcagcctgttgccggcccgggagttt
cccaccgatgaagccgctatcgagctgtttcgcggccagtatcgcgaacagttcgagatc
tcccgcgccgagggctccatctatcaggaggtgagcaagggacgctggccggcaggtatc
gagtactatctgccgctcttcttccagcagaccgccagcctgtttgatcacctgccggac
aacaccctgctgctgaccgtgggggagatctaccccgccgcccagcgcttctggaacgac
atcggccagcgctatgaagacaggcgctgggacaatacccgtcccctgctgccgccccag
cagatctacctgccggtggagcagctgtttgccgccctgggtcagtacgcggccgtacgg
ctgcaggaggcccccaccgccggcgatgcgggccagcacgacctccctctctcggcgctg
ccggatcttcagctcgatcacagcaaggagcagccgctgctggccctcagccagttcctg
caaggctttgccggccgcaccctgtttgcggtggagtccgaaggtcggcgcgaggtgctg
ggggatctgctggcgcgcatcgcgctgcaacccaaggagttcgcctcgctcgatgccttc
atcaccagcaaggcccgccacggcctgctggtggcaccgctcgaacgcggtttcttgctg
cgagagccggggcaagaggagctggcgctcatcaccgagaccgaactgctgggcggcaag
atccgcagcaaacggcaacgggagaagagcaagaacttaagctcggatgcggtgatccga
aacctgggcgagctgacccagggtcagccggtggtgcatctggatcacggggtcggccgc
tatctggggctggaaaccatcgacgccggcggcctgcccaccgagtttctgaccctcgaa
tacgccggtggcgacaagctgttcgtgccggtcaccagcctgcacctcatcagccgctat
acaggatccgacaacccgcccagccacaagctcggcggcgaggcctgggtcaaggcgcgg
cgcaaggcggccgagaaggtgcgcgacgtggcggccgagctgctcgatgtctacgcccac
cgcgcggcccgcgccggctttgccttcaagcacgaccgcgaggcctatcgccagtttgcc
gccggcttcccgttcgaggagaccgaggatcagctcaatgccatcaatgcggtgcttggc
gatatgtgccaggccaagagcatggatcggctggtgtgcggcgacgtgggctttggcaag
accgaggtggcgatgcgggcggcctttgtggccgtgcacggcggcaagcaggtggccgtg
ctggtgcccaccaccctgctcgcccagcagcactatgacaacttccgcgatcgcttcgcc
aactggccggtgcgggtcgaggtgctgagccgcttccgctccgccaaggagcagagcgcc
gtgatgaaggagatggccgagggcaaggtggacatcatcatcggcacccacaagctgctg
ggcgccgagctcaccttcaaggatctcggcctgctcatcgtcgacgaggagcatcgcttc
ggggtgcgccagaaggagaagatcaaggcgctgcgcgccgacgtggatatcctcaccctt
accgccacccccattccgcgtaccctcaacatggcgatgtcgggcatgcgggatctctcc
atcatcgccaccccgcccgccaagcgcctggccatcaagaccttcgtgcgccagcatgag
ccggcggtggtgcgcgaggcggtgctgcgggaattgaagcgtggcggtcaggtctactac
ctgcacaacgacgtggagagcatcgagaagtgcgcggcggatcttgccgagctggtgccg
gaggcgcgcatcggcatcgcccacggccagatgcgtgagcgcgagctcgagcgggtgatg
tcggatttctaccaccagcgcttcaacctgctggtctgcaccaccatcatcgagaccggc
atcgacgtgccaagtgccaacaccatcatcatggaccgggcggatcatctgggcctggct
cagttgcaccagctgcggggccgggtcggccgctcccaccaccaggcctatgcctacctg
ctcaccccccatcccaagctgatgaccaaggatgcggccaagcgactggaggccatcgcg
tcgctggaagatctcggcgccggctttgcgctggccacccacgatctggagatccgcggc
gccggcgagctgctgggcgacgatcagagcggccagatcgaatcggtgggcttcaccctc
tacatggagatgctggagcaggcggtggaggcgctcaaacatggcaaggagccgtcgctc
gaacaactcatgagtcagcacaccgaggtggagctgcgcctgcccgccttgctcccggac
gactacatcccggacgtcaacatgcggctctccatgtacaagcggatcgccagtgcggcg
gacgagcaggagctgcgcgaactcaaagtggagctcatcgaccgcttcggcctgctgccg
gaaccaaccaagaccttgatggagctggccgccttccgccagcgcgccacggcgctgggc
attcgccgggtggagatgagcgagcgcggcggctatctggactttacccaggagacccgc
gtcaacccggcctatctggttaagctgctctccgagcagccgcgcatctacaagatggac
gggccgacccggctgcgcttccaggtgccgacccaggatcgggccatgcgcctcaaactg
gtggacggtctgctggcggatctcgccagccacgccagtccctga
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