Alloalcanivorax dieselolei: B5T_01837
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Entry
B5T_01837 CDS
T02259
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
adi
Alloalcanivorax dieselolei
Pathway
adi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
adi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B5T_01837 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adi03400
]
B5T_01837 (mfd)
Enzymes [BR:
adi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5T_01837 (mfd)
DNA repair and recombination proteins [BR:
adi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B5T_01837 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFT70112
UniProt:
K0CEL6
LinkDB
All DBs
Position
complement(1989370..1992825)
Genome browser
AA seq
1151 aa
AA seq
DB search
MTLTLLPDSSLFSTGREHYRDWRDPGAGGLAAVLAELARRDEGLLLVAAPSSNRAQQLAD
SLAFYLADSKVPVRLFPDWETLPYDLFSPHQDIVSDRIQALHWLGQARSGVLVVPVNTLM
QRLAPPIHINGNHFQLKVNDTFDMEATRQQLVACGYRQRDNVYEHGEFAVRGAIMDIFPM
GATQPFRVELFDQDIESLRLFDPESQRSTGQVREINLLPAAEYPLSQDGIRHFRGAFRET
FDVEPRKVPLYEEVSEGIASPGLEYYLPLFFEQLATLFDYLPPNARLVELAECEQAAQHF
WDEVSQRYESRRHDIRRPVLPPQSLFLRPDELAGAWKTLPRARVRDSEQALTFNLARSPR
LAADPRSGNVLAPLHTFSDAHPDTRILVVAETAGRREALLELMQNISIQPALKQGWRDFL
DAPERWNLTRGELDAGFYAPDHELLVVSESELYGERIMQRRRRRTSEDSGQDLAVRSLGE
LTIGAPVVHLDHGVGRYQGLVHMTVDHQPHEFLLLEYAGGDKLYVPVSSLHLISRYGGGE
HPPLNRLGSEQWSKARQKAAEKINDVAAELLNTYARREAREGRGFPLEQEDYQRFASGFP
FEETPDQENAINAVIADMQRQKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGTQVAVLVPT
TLLAQQHYDSFVDRFADWPVQIEVLSRFRSAKDKSQVLERLAEGKVDIVVGTHQLLQENV
RFKDLGLIIVDEEHRFGVRHKERLKEMRAECDILTLTATPIPRTLNMALSGMRDISIIAT
PPQRRLSVKTFVRQRDDTALKEAILRELLRGGQVYYLHNDIDTMSRAAEQIQSLVPDARV
GIAHGQMRERELEAVMGDFYHRRFNVLVCTTIIETGIDVPSANTIIIERADKLGLAQLHQ
LRGRVGRSHHQAYAYLVTPSPKAMTKDALKRLEAIEQATDLGAGFVLASQDLEIRGAGEL
LGEEQHGNMETIGFTLYMEMLEQAVEALKRGEQPDTAKPLSGGPEVNLRVPALIPEDYLP
DVFTRLTLYKRIAGCKTGDQLRELQVEMIDRFGLLPEAVKTLFKVTALRQQAEALAITRV
DANAAGGKLEFAERTPVDPLTVVKLMQNAPNRYRLEGAHTLRFQLPSETADERVQLVEQL
LEHLAGNGKAP
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgaccctgttacccgattcttccctgttttccactggacgtgaacactaccgc
gactggcgcgaccccggcgccggcggcttggcggcggtactggcggaactggcccgccgc
gacgagggcctgctgctggtagcggcgccgtccagcaaccgtgcccagcagttggccgac
tcgctggccttttacctcgctgacagcaaggtgccggtgcggctgttccccgactgggaa
accctgccctacgatctgttcagtccccaccaggacatcgtcagcgaccgcatccaggcg
ctacactggctcggtcaggctcgcagcggcgttctggtggtgccggtgaacacgctgatg
cagcggctggcgccgccgatccatatcaatggcaatcatttccagctcaaggtcaacgac
acctttgatatggaagccacccgccagcaactggtggcctgtggctaccggcaacgcgac
aacgtctatgaacacggcgagttcgccgtgcgtggcgccatcatggacatcttccccatg
ggcgcgacgcaaccgttccgggtggaactgttcgatcaggacattgaatccctgcgtctg
ttcgacccggaaagccagcgctccaccggccaggtgcgggaaatcaatctgctgccggcg
gcggagtacccgctcagccaggacggcatccgccatttccgcggtgccttccgcgaaacc
ttcgacgtggagccaagaaaagtaccgctctacgaagaagtgtccgagggtatcgccagt
ccggggctggagtactatctgccgttgttcttcgagcaactggccactttgttcgactac
ctgccgcccaatgcccggctggtggaattggcggagtgcgagcaggccgcccagcacttc
tgggacgaggtcagtcagcgctacgagtcccgtcgccacgacatccgccggccggtgctg
ccgccgcaaagtctgttcctgcgcccggacgagctggctggcgcctggaaaaccctgccc
cgggcccgggtgcgtgactccgaacaggcgctgaccttcaacctggcacgctcaccgcgg
cttgccgccgacccgcgcagcggcaatgtactggcgcccttgcataccttctccgatgct
cacccggacacccgcatcctggtggtggcggaaaccgccgggcgccgcgaggcgctgctc
gaactgatgcaaaacatctcgatccagccggctttgaaacaaggctggcgggacttcctc
gacgcccccgagcgctggaatctgacccggggtgagctcgacgccggcttctacgcgccg
gaccacgaactgctggtggtcagcgaaagcgagctgtacggcgagcggatcatgcagcgc
cggcggcggcgcaccagcgaggacagcggtcaggatctggcggtccgctccctgggcgag
ctcaccatcggcgctccggtggtgcacctggaccacggcgtcggccgctatcagggcctg
gtgcacatgaccgtggatcaccagccccatgaatttttgctgctggagtacgccggcggc
gacaagctctacgtaccggtgtcctcgctgcacctgatcagccgctacggcggcggcgaa
catccgccactgaatcgcctgggcagtgagcaatggagcaaggcgcggcaaaaagccgcg
gaaaaaatcaacgacgtggcggcggaattgctcaacacctacgctcgtcgcgaagcccgc
gaagggcgcggtttcccgctggagcaagaggattatcagcgtttcgccagcggtttcccg
ttcgaggaaaccccggaccaggaaaacgccatcaacgcggtgatcgccgacatgcaacgg
caaaaacccatggaccgcctggtctgtggcgatgtcggtttcggtaagaccgaggtggcc
atgcgcgccgccttcgtggcggttcagaacggcacccaggtggccgtgctggtccccacc
accctgctcgcccaacagcattacgattctttcgtcgaccgtttcgccgactggccggtg
cagatcgaagtgctgtcccgcttccgcagcgccaaggacaaaagccaggtgctggaacgg
ctcgccgagggcaaggtggatatcgtcgtcggcacccaccagttgctgcaagagaacgtc
cgcttcaaggacctgggcctgatcatcgtcgacgaggaacaccgcttcggcgtgcgccac
aaagagcggctcaaggaaatgcgcgccgagtgcgacatcctcaccctcaccgccacaccg
attccgcgcaccctgaacatggcgctcagcggcatgcgcgacatttccatcatcgccacg
ccgccgcagcggcgcctgtcggtgaaaaccttcgtgcggcaacgggacgacaccgccctc
aaggaagccatcctgcgggagttgctgcgtggcggccaggtctactacctgcacaacgac
atcgacaccatgagccgcgccgccgagcagatccaatcgctggtgccggacgcacgggtc
ggcatcgcccacggccagatgcgcgaacgggaactggaagcggtgatgggcgacttctac
catcgccgtttcaacgtgctggtgtgcaccaccatcattgaaaccggtatcgacgtgccc
agcgccaacaccatcatcatcgagcgcgccgacaagctcggcctggctcagttgcaccaa
ttgcggggacgggtcggccgcagccaccaccaggcctacgcctacctggtcacgccttcc
cccaaggcgatgaccaaggacgcgctgaaacggctggaagccatcgaacaagccaccgac
ctgggcgctggcttcgtgctcgccagccaggatctggaaatccgtggtgccggcgaactg
ctcggtgaagagcagcacggcaacatggaaaccatcggtttcacgctctatatggaaatg
ctggagcaggcggtggaagcgctcaaacgcggtgagcaaccggacaccgccaaaccgctg
tccggcggcccggaagtcaacctgcgggtgccggccctgattccggaagactacctgccg
gacgtgttcacccgcctgaccctgtacaagcgcatcgccggctgcaaaaccggcgaccag
ttacgggaattgcaggtggagatgatcgaccgtttcggcctgctgccggaagcggtgaaa
accctgttcaaggtcaccgctctgcggcaacaggcggaagcgctggccatcacccgggtg
gacgccaacgccgccggcggcaaactggagttcgccgagcgcaccccggtggacccgctc
accgtggtcaaactgatgcagaacgcccccaaccgctaccgcctggaaggcgcccacacc
ctgcgcttccaactgccatcggaaaccgccgatgaacgcgttcaattagtcgagcagctg
ttggaacatctggcggggaacgggaaagcaccgtaa
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