Alloalcanivorax dieselolei: B5T_03801
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Entry
B5T_03801 CDS
T02259
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
adi
Alloalcanivorax dieselolei
Pathway
adi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
adi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B5T_03801 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adi03021
]
B5T_03801 (rpoC)
03400 DNA repair and recombination proteins [BR:
adi03400
]
B5T_03801 (rpoC)
Enzymes [BR:
adi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B5T_03801 (rpoC)
Transcription machinery [BR:
adi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B5T_03801 (rpoC)
DNA repair and recombination proteins [BR:
adi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B5T_03801 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFT72063
UniProt:
K0CHF8
LinkDB
All DBs
Position
complement(4207640..4211842)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNLLKSQGQVTEFDKIRIGLAPPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLTDEEYFDALEQFGDEFEAKM
GAEAVQQLLQDLDLRDEINTLREEIDSTNSDTKLKKLSKRLKLMEAFQASGNEPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHECGLPKKMALELFKPFIFSKLEGRGLATTIKAAKKMVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIGPTQDVVLGLYYISREKVNVKGEGRVFADTKEVMRALGTK
EVDLHARIKVRLEDVVKDQEGNIHREWRIADTTPGRCKIWDIVPEGIGFDMVNQNMTKKA
ISKLLNTCYRILGTKETCIFADQIMYLGFREATLSGSSIGVEDMVIPQAKYELIGKAEEE
VREIEEQFASGLVTRGERYNKVVDIWSRTNDQIAKAMMENLKTEVVKNREGKDEEQGSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEEDCGTEQGLIMTPLIEGGDVVEPLRERVL
GRVVARDVMNPLNQDEVAVEAGTLLDEVWVDKLETMGVDEVKVRSSITCATRWGVCSSCY
GRDLARGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVSSIQIKHGGKVR
FHNAKHVTHKDGLVIVSRSAELAVADDLGRERERYKVPYGALVTVNEGNSVDGGQVVATW
DPHTHPIIAEAAGKVLFGDMEEGIAVTYQTDELTGLTNIEVMPSQDRPSAGKDLRPVVRV
VDGKGKAVSLPNTDAPANYFLPGGALCGLKNGADISVGDVIARIPQESSKTRDITGGLPR
VADLFEARNPKEAAILAEKTGTVSFGKETKGKVRLVITPDDGGDTYEELIPKWRQLNVFE
GEHVEKGEVVSDGPLNPHDILRLKGEVELARYIVNEVQEVYRLQGVKINDKHIETIIRQM
LRKVEITEVGESAFIKGEQVEYARVMEELDRLKGEDKMRPQFDRMLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGYAYHMDRRRQRADARGDG
PTMDEVEAALSEALSSSDQE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatttgctcaaaagtcagggacaagtcacggagttcgacaagatc
cgcatcggtctggcaccgccggatctgatccgctcctggtcttttggcgaagtgaaaaag
ccggagaccattaactaccggacctttaagccggagcgtgatggcctgttctgcgcgcgc
atttttggtccgatcaaggactacgaatgcctgtgcggtaagtacaagcgtctcaagcac
cgtggtgtgatctgtgagaaatgtggcgttgaagtcacgctctccaaggttcgccgtgag
cgcatgggccatatcgaactggccagcccggttgcccacatctggttcctgaagtcgctg
ccgtcccgcatcggtctgatgctggacatgaccctgcgcgacattgagcgggtgctgtac
ttcgaatcctttgtcgtgaccgagccgggcatgaccaccctggaacgtggccagctgctg
accgacgaagagtacttcgatgcgctggaacagttcggtgatgagttcgaagcgaagatg
ggcgcggaggcggtgcaacagcttctgcaggatctggatctgcgcgacgagatcaacacg
ctgcgtgaagagatcgactccaccaactccgacaccaagctgaagaagctgtccaagcga
ctgaagctgatggaagcgttccaggcttccggtaatgagccggagtggatgatcatgacc
gttctgccagtgctgccgccggatctgcgtccgctggtgccgctggatggtggccgcttc
gccacttccgatctgaacgatctgtatcgccgggtgatcaaccggaacaaccgtctcaag
cgcctgctggacctgaacgccccggacatcatcgtgcgtaacgaaaaacgcatgctgcag
gagtccgtggacgcgctgctggataacggccgccgcggccgtgccatcaccggttccaac
aagcgcccactgaagtccctggcggatatgatcaagggtaagcaagggcgtttccgtcag
aacctgctcggtaagcgggtggactactccggtcgttccgtgatcgtggtggggccgacc
ctgaagctgcacgagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
atcttctccaaactggaagggcgcggcctggccaccaccatcaaggcggccaagaagatg
gtcgagcgcgaaaccgccgaggtctgggacattctggccgaggtgatccgcgagcacccg
gtgatgttgaaccgggcgccgaccctgcaccgtctcggcattcaggcgttcgagccggta
ctgatcgagggtaaggcgattcagctgcatccgctggtgtgtgccgccttcaacgccgac
tttgacggtgaccagatggcggtgcacgtaccgctgaccctggaagcgcagctcgaagcc
cgggcactgatgatgtccaccaacaacatcctgtctccggccaacggtgagccgatcatc
ggcccgacccaggacgtggtgctgggtctgtactacatcagccgtgagaaggtgaacgtc
aaaggcgaaggccgggtgttcgccgacaccaaggaagtgatgcgcgcgctgggcaccaaa
gaggtggatctgcacgcccgcatcaaggtgcgcctggaggatgtggtcaaggaccaggaa
ggcaacatccaccgggaatggcgtatcgcggataccactccgggccgctgtaaaatctgg
gacatcgtgccggaaggcatcggcttcgacatggtcaaccagaacatgaccaagaaggcg
atctccaagctgctgaacacctgctaccggatcctgggtaccaaggaaacctgtatcttc
gctgaccagatcatgtatctgggtttccgcgaagcgaccttgtccggctcctccatcggt
gtggaggacatggtcattccgcaggccaagtacgagctgatcggcaaggccgaggaagag
gtgcgcgagatcgaggagcaattcgcttccggtctggtaacccgcggtgagcgctacaac
aaggttgtggacatctggtcccgtaccaacgaccagatcgccaaggcgatgatggagaac
ctgaagaccgaagtggtgaaaaaccgcgaaggcaaggatgaagagcagggctccttcaac
tccatcttcatgatggccgattccggggcgcggggttccgccgcccagattcgtcagctg
gccggtatgcgcggcctgatggccaagccggacggctccattatcgaaacgccgattacc
agtaacttccgtgaaggtctgaacgtactgcagtacttcatctccactcacggtgcccgg
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgacccgtcgtctg
gtggacgtggcccaggatctggtgatcaccgaggaagattgcggcaccgagcagggtctg
atcatgaccccgctgattgaaggtggcgatgtggtcgagcccctgcgtgagcgggtgctg
ggtcgggtcgtggcccgcgacgtgatgaatccgctgaaccaggacgaagtggccgtggaa
gccggcaccctgctggacgaagtatgggtggacaagctggaaaccatgggtgtggacgaa
gtgaaggtgcgttcctccatcacctgtgccacccgttggggcgtgtgttcctcctgttac
ggccgtgatctggcccgtggccatcaggtcaacgtgggtgaggctgtcggtgtcatcgcg
gcccagtccattggtgagccgggtacccagctgaccatgcggaccttccacatcggtggc
gcggcaagccgggcctccgcggtgtccagcatccagatcaagcacggcggcaaggtgcgt
ttccacaacgccaagcacgtgacccacaaagacggtctggtgatcgtttcccgctcagcc
gagctggcggtggccgatgatctgggccgcgagcgcgagcgctacaaagtgccctacggt
gctctggttacggtgaatgaagggaattccgtggacggtggtcaggtcgtggcgacctgg
gacccgcacactcacccgatcatcgccgaagccgcgggtaaggtgctgttcggtgatatg
gaagaaggtatcgcggttacttatcagaccgatgagctgaccggcctgaccaacatcgaa
gtgatgccgagtcaggaccgtccgtccgcgggcaaggacctgcgtccggtggttcgtgtg
gtggatggcaaaggtaaggcggtaagcctgccgaataccgatgccccggccaactacttc
ctgcccggcggcgcgttgtgcggcctgaagaacggggccgatatctcggtgggtgacgtg
atcgcgcggattccgcaagagtcttccaagacccgggatatcaccggtggtttgccgcgg
gtggcggatctgttcgaggcccgtaatccgaaagaagcagctattctggcggaaaaaacc
ggtaccgtgtccttcggcaaggaaaccaagggcaaggtgcgtttggtgattaccccggac
gatggtggcgacacctacgaggagctgatccccaaatggcgccagctcaacgtgttcgaa
ggtgagcacgtggagaaaggcgaggtggtttccgacggcccgctgaacccgcatgacatt
ctgcgtctcaagggtgaggtggagctggcccgctatatcgtcaacgaagtgcaggaggta
taccgcctgcagggtgtgaagatcaacgataagcatatcgaaacgatcatccgccaaatg
ttgcgtaaggtggaaatcaccgaagtcggcgagtcggccttcatcaagggcgagcaagtg
gaatacgcccgggtgatggaagagctggatcgcctgaaaggtgaagacaagatgcggcct
cagtttgatcggatgctgctgggtatcaccaaggcttccctggccaccgaatcgttcatc
tccgcggcctccttccaggagaccacccgggtgttgaccgaagcggcggtaaccgggaaa
gaagacgatctccgcggtctcaaggagaacgtggtcgtgggccgtctgattccggccggg
actggctatgcctatcacatggatcgccggcgccagcgtgcggatgcgcgcggtgacggt
ccgaccatggacgaggtggaagcggctctgtccgaggcgctcagctcttctgatcaggag
taa
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integrated database retrieval system
