Alloacidobacterium dinghuense: H7849_22385
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Entry
H7849_22385 CDS
T08177
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
adin
Alloacidobacterium dinghuense
Pathway
adin02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
adin00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H7849_22385 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adin03021
]
H7849_22385 (rpoD)
Transcription machinery [BR:
adin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H7849_22385 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Rota_NSP3
HTH_20
PHM7_cyt
Motif
Other DBs
NCBI-ProteinID:
QNI31762
UniProt:
A0A7G8BGU2
LinkDB
All DBs
Position
complement(5356456..5358144)
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AA seq
562 aa
AA seq
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MAMEDKYEDDIQKLIDTGKEKGYLTYGEVNDLIPNDLNSPDDLDDLITTIGTQGIDLLDE
GGPKFGGDKYEEGEEGEDVELDLTPGTLEKTNDPVRMYLREMGTVPLLTREGEVEIAKRI
ERGQLRVMKAISRSSIVIREIVGLGEDLKRGVRNIKEVVIFDEEEITEEILQARVKQTVS
RIDALVKHQKKAAAFEEKLETINPKAKAKEHRKTRWAIAREKVYVSRIVRELKYTNQERK
RLLDKLNKTVDSMRMLERQIKSLDQKHDQSKSEELKKEYRRQQKNCKIDLEELEQEAGVS
IAELKRTQREMIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEL
GREPTSEEIAKRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRMAVSPSDA
VISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKA
LRKLRHPSRSRKLKAFVDAVTE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
ttggcgatggaagacaagtacgaagacgatatccagaaactgattgatacaggtaaggaa
aaaggttacctcacctatggtgaagtgaacgacctgattccgaatgacctgaattcacca
gatgatctcgacgatctgatcaccacgatcggaacgcaggggattgatttgctcgatgag
ggcggccccaagtttggcggcgacaagtacgaagaaggcgaagaaggcgaagacgttgag
ctcgacctaacgccgggtaccctcgaaaaaaccaatgaccccgttcgcatgtatctgcgc
gagatgggcaccgtaccactgctcacgcgcgaaggcgaagttgaaatcgccaagcgcatc
gagcgcggccagctccgcgtcatgaaggccatttcgcgctcatcgattgtcattcgcgaa
atcgtcggcctcggcgaagacctcaagcgcggcgtacgcaacatcaaggaagtggtgatc
tttgacgaagaagagatcaccgaagagatcctgcaggcgcgcgtcaagcagaccgtttcg
cgcatcgacgcgctggtcaagcaccagaagaaagccgcagcgttcgaagagaaacttgag
accatcaacccgaaggcaaaggccaaagaacaccgcaagacgcgctgggccatcgcacgc
gagaaggtctacgtttcgcggatcgttcgcgagctgaagtacaccaaccaggagcgcaag
cgccttctcgacaagctcaacaagaccgtcgactccatgcgcatgctcgagcgccagatc
aagtcgctcgaccagaagcacgaccagtcgaagagcgaagagctcaagaaggaataccgc
cgccagcagaagaactgcaagatcgatctcgaagagctggagcaggaagccggtgtctcc
attgccgaactcaagcgcacgcagcgcgagatgattcaaggcgacatggacgccgagcag
gcgaagcgcgaactgatcgaagccaatcttcgtctggtcgtctcgattgcgaagaagtac
accaaccgcggtctccagttcctcgacctgattcaggaaggcaacatcggcctgatgaag
gcggtcgataaattcgagtaccgtcgcggttacaaattctcgacctatgccacctggtgg
atccggcaggccatcacccgcgctatcgcggaccaggcccgcacgatccgtatcccggtg
cacatgatcgagacaatcaacaagcttatccgcacttcgcgtcagctggtgcaggagctt
ggccgcgagccaacctcggaagaaatcgccaagcgcatggatatccctgtcgcgaaggtt
cgcaaggttctcaagatcgcacaggagcccatctcgctcgaaacgccgatcggagaagaa
gaagattcgcacctcggcgacttcatcgaagaccgcatggccgtatcgccttccgacgct
gtcatcagcgtcaacttgaaggaatacacctcgcaggtccttaggaccttgacgccgcgc
gaagagcgcgtcatcaagatgcgcttcggcctcgaagacggctccgagcacactctagaa
gaagtgggccagagtttccaggtcacccgcgagcgcatccgccagatagaagccaaggca
ttgcgcaagctgcgtcatccgtcgcgttcacgcaagctgaaagccttcgtcgacgccgtc
accgaataa
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