Azospirillum doebereinerae: ACIU1J_08640
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Entry
ACIU1J_08640 CDS
T10877
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
adj Azospirillum doebereinerae
Pathway
adj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACIU1J_08640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adj03019
]
ACIU1J_08640
Enzymes [BR:
adj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACIU1J_08640
Messenger RNA biogenesis [BR:
adj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACIU1J_08640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SUa-2TM
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XKH33775
LinkDB
All DBs
Position
contig_1:1770308..1771804
Genome browser
AA seq
498 aa
AA seq
DB search
MTEFSGLGLIEPLLRAVAEEGYTTATPIQAGTIPLLLQGRDVLGLAQTGTGKTAAFTLPI
LQRLFENKKRVAAKAPRTLILTPTRELALQIGDSFATYGKHLPIRRTVIHGGVGQSPQIA
ALTRGVEVLIATPGRLLDLMAQNHCKLDAIEVFVLDEADRMLDMGFIRDVRKVVAVMNKQ
RQTLLFSATMPEAVTELANSILSNPERIEVTPQSTTVERINQSVLFVDRADKRRLLADLL
LDSKVARTIVFARTKHGADRVAEHLKKAGIAADAIHGDKSQSARVRALESFRAGELRALV
ATDIAARGIDVDGISHVINFDLPNEPESYVHRIGRTARAGTTGSAVSFCDHEEVGYLKDI
EKTIRQPIPIDNTHPFHAVEVAQIHASSKPPPRPKAPGSNRNQNQGGGRGQQQPAANRSA
APAGKPAQPRAAQPKPAQPKPAQARPPQGTKPASHPQASKTPKPGAQQNRHDRRPQAHAA
ATRPTGGDTPLKKKTSAA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattctccggcctcggcctgatcgagcctcttctgcgcgccgtcgccgaggaa
ggctacaccacggccacgccgatccaggccggcaccatcccgctgctgctgcagggccgc
gacgttctcggcctcgcccagaccggcaccggcaagaccgccgccttcaccctgccgatc
ctccagcggctgttcgaaaataagaagcgcgtcgccgccaaggcgccgcgcacgctgatc
ctgaccccgactcgcgagctggccctccagatcggcgacagcttcgccacctacggcaag
catctgccgatccgccgcaccgtgatccacggcggtgtcggccagagcccgcagatcgcc
gcgctgacccgcggcgtcgaggtgctgatcgccacgccgggccggctgctcgacctgatg
gcgcagaaccactgcaagctcgacgcgatcgaggtcttcgtcctcgacgaggccgaccgg
atgctcgacatgggcttcatccgcgacgtccgcaaggtggtcgcggtcatgaacaagcag
cgccagacgctgctgttctcggccaccatgcccgaggcggtgacggagctggcgaacagc
atcctgtccaaccccgagcgcatcgaggtcacgccgcaatccaccacggtggagcgcatc
aatcagagcgttctgttcgtggaccgcgccgacaagcgccgcctgctggccgacctgctg
ctcgacagcaaggtcgcgcggaccatcgtgttcgcccgcaccaagcacggcgccgaccgc
gtggccgagcatctgaagaaggccggcatcgccgccgacgcgatccacggcgacaagtcg
cagtcggcccgcgtccgcgcgctggaatccttccgcgccggcgaactgcgggcgctggtg
gcgaccgacatcgcggcgcgcggcatcgacgtggacggcatcagccacgtcatcaacttc
gacctgccgaacgagccggaaagctacgtccaccgcatcggccggaccgcgcgggccggc
accaccggcagcgcggtgtccttctgcgaccatgaagaggtcggctacctgaaggacatc
gagaagacgatccgccagccgattccgatcgacaacacccacccgttccacgcggtggag
gtggcgcagatccacgcctcgtccaagccgccgccccgcccgaaggcgcccggcagcaac
cgcaaccagaaccagggcggcggacgcggccagcagcagccggcggccaaccgttcggcc
gccccggcgggcaagccggcgcagccccgtgcggcccagcccaagcccgcgcaacccaag
cccgcccaggcccggccgccccagggcaccaagccggccagccacccgcaggccagcaag
acgcccaagcccggcgcccagcagaaccgccacgaccggcgcccgcaggcccacgccgcg
gccacgcgcccgaccggcggcgacaccccgctgaagaagaagaccagcgcggcgtaa
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