Azospirillum doebereinerae: ACIU1J_30220
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Entry
ACIU1J_30220 CDS
T10877
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
adj Azospirillum doebereinerae
Brite
KEGG Orthology (KO) [BR:
adj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adj03021
]
ACIU1J_30220 (rpoH)
Transcription machinery [BR:
adj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACIU1J_30220 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
HTH_25
Snapin_Pallidin
Sigma70_r3
HTH_3
Motif
Other DBs
NCBI-ProteinID:
XKH38821
LinkDB
All DBs
Position
contig_5:397077..397961
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AA seq
294 aa
AA seq
DB search
MATVSSVPAIGSESNLSRYLQEIRKFPMLEPEKEYMLAKSWQQHEDSGAAHQLVTSHLRL
VAKIAMGYRGYGLPLSELISEGNVGMMQAVKRFDPDRGFRLATYAMWWIRAAIQEYILHS
WSLVKMGTTAAQKKLFFNLRRLKGQMQAIEEGDMSPEQVNAIATKLSVPEQDVVNMNRRL
ASPDHSLNAPLRVDGEGEWQDWLVDESANQEITLGDQQELGKRRKLLGGAMETLNERERD
ILVERRLREVPMTLEDLSQKYGISRERVRQIEVRAFEKLQKAIKNAAVEQNLAL
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagtgtccagcgttccggcgatcgggtccgagagcaatctctcccgctatctc
caggaaatccgcaaatttccgatgctggagccggaaaaggaatacatgctggccaagagt
tggcagcagcacgaggattccggcgccgcccaccagctcgtcaccagccacctgcggctc
gtcgccaagatcgcgatgggctaccggggctacggcctgcccttgtccgagctgatctcc
gagggcaacgtcggcatgatgcaggcggtcaagcgcttcgacccggatcgcggcttccgt
ctggccacctacgccatgtggtggatccgcgcggccattcaagaatacatcctgcacagc
tggtcgctggtgaagatgggcaccaccgccgcgcagaagaagctgttcttcaacctgcgc
cgcctgaagggccagatgcaggcgatcgaggagggcgacatgtcgcccgagcaggtcaac
gccatcgccaccaagctgtcggtgcccgagcaggacgtggtcaacatgaaccggcgcctc
gccagccccgaccattcgctgaacgcgccgctgcgcgtcgacggcgagggcgagtggcag
gactggctggtggacgaatcggccaaccaggagatcacgctgggcgaccagcaggagctg
ggcaagcggcgcaagctgctgggtggcgccatggagaccctgaacgagcgcgagcgcgac
atcctggtggagcgccgcctgcgcgaggtgccgatgacgctggaggatctgtcgcagaaa
tacggcatcagccgcgagcgcgtccgccagatcgaggtccgcgccttcgagaagctgcag
aaggcgatcaagaacgcggcggtggagcagaatctggcgctgtga
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