Alicycliphilus denitrificans K601: Alide2_1251
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Entry
Alide2_1251 CDS
T01463
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
adk
Alicycliphilus denitrificans K601
Pathway
adk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide2_1251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adk03019
]
Alide2_1251
03009 Ribosome biogenesis [BR:
adk03009
]
Alide2_1251
Enzymes [BR:
adk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Alide2_1251
Messenger RNA biogenesis [BR:
adk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Alide2_1251
Ribosome biogenesis [BR:
adk03009
]
Prokaryotic type
rRNA processing factors
Alide2_1251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
AEB83655
UniProt:
F4GCX2
LinkDB
All DBs
Position
complement(1313152..1316238)
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFSEGVSPSQARINDVIREGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWNAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQ
QFMQHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVNLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGAISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFSLQ
MLRMIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVVLIPNKTLETPH
YKLDRLKHDDPRLENLDASYKLADVVEEQTRVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAQRGAARGQGQQQQAAAAPAPAQPRPAPAPAPEQGFFAWLKSLFGFGPAPSPAPV
ATPAPQPAEPAARGEARRGGERGNRRGGERSGSRDANREGAGAEGRGRRGERQAEGRDTR
EPRNGRDGERRSERTESEGRREGRGGRDRGERGTQQPAQAAADLAVNAEATATQERGERA
PRNGERGERAERRERGERGERSRERGPRTIDADAPAATATATATATATATAAAAADFADT
APLTSLPDLDLTANETASATPEAANGGEERRERRSRDRYGRDRRERGERGARAAEAASAA
PLMEFDLPAAQAEAPADAEPAPEPARRSYFAAPAAQPAAAPAAEPIAAPVAAEPAAAAPV
APPAPEQAVTVAGIAPASAEPEAVAVSAPSAQAEEPAPTGGMPRVQAFTLPVDSLIQVAQ
ASGLEWVNSDAGKIAAAQAAIAAEPKPVRVPRERPPAPVLDEGPLVLVETRRDLRDMQLP
FEKEGTAA
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgccacgcagcccgaggagcggcgcctggccatcgtggac
ggccagaagctgctggactacgagatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtggtcacgcgcgtggagccgtcgctggaggcctgcttcgtcgactac
ggcgaggaccgccacggcttcctgccgttcaaggaaatctccaagcagtacttctccgag
ggcgtctcgcccagccaggcgcgcatcaacgacgtgatcagggaaggccaggagctcatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatcagc
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtctcgcgc
cgcatcgagggcgaggaccgcgccgagctgaaagaggcgatggaccagctcgaatacccc
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgcagcgcgcccgagctgcag
tgggacctgaactacctgctcaagctctggaacgccatcgacggcgcggccaaggccggc
aagggcgcgttcctgatctaccaggagtcgagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggcgacatcctgatcgacaccgacgacatctacgaacaggcgcag
cagttcatgcagcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gcgccgctgttctcgcgcttccagatcgagcaccagatcgaatccgcctatgcgcgcacc
gtcaacctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtcagcgtg
gacgtgaactccgcgcgcgccatcaagggcggcgacatcgaggagaccgccacgcgcacc
aacctggaggccgccgacgaggtggcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggaatcgaaaaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcgcgcgtgcagttcggcgccatcagcaagttc
ggcctcatggagatgagccgccagcgcctcaagccctcgctgtccgaaggcgctcacatc
cgctgcccgctgtgcgacggcaccggccacgtgcgcgatacggaaggcttctcgctgcag
atgctgcgcatgatccaggaagagtccatgaaggacaacaccgccgccgtgcactgccag
gtgcccgtggaggtggcgagcttcctgctcaacgagaagcgcaccgagatcgccaagatc
gagctcaagcagcgcgtcaacgtggtgctgattcccaacaagacgctggagacgccgcac
tacaagctcgatcgcctcaagcacgacgacccgcgtctggagaacctggacgccagctac
aagctggccgacgtggtcgaagagcagacccgcgtcacgcgccgctcgcaggagccgacc
aacaagcagaccccggtgatcaagggcgtactgcccgacgcgcccgcccccgtggccgag
ccgcgccccgagggcgcccagcgcggcgccgcgcgcggccagggccagcagcaacaggct
gcggcggcacccgcccctgcgcagccgcgccccgcaccggcgcccgcgccggaacagggc
ttcttcgcctggctcaagagcctgttcggcttcggcccggcaccctcgcccgcccccgtg
gccacgccggcgccgcagccggccgagccggcggcacgtggcgaggcgcgccgcggcggc
gagcgcggcaaccgccgcggcggcgagcgcagcggcagccgtgacgcgaaccgcgaaggc
gccggcgccgaaggccgcggccgccgtggcgaacgccaggccgaaggccgcgacacccgc
gagccgcgcaacggccgcgacggcgagcgccgcagcgaacgcaccgagagcgaaggccgg
cgcgaaggccgtggcggccgtgatcgcggcgagcgcggcacgcagcagccggcacaggcc
gccgccgacctggcggtgaacgcggaagccacggcaacgcaggagcgcggcgaacgcgcc
ccgcgcaacggcgaacgcggcgaacgtgcagagcgccgggaacgtggcgaacgcggtgaa
cgcagccgcgagcgcggcccccgcaccatcgatgcggacgcaccggccgccaccgccacc
gccaccgccaccgccaccgccaccgccaccgccgctgccgctgccgacttcgccgatacc
gcgccgctgacctcgctgcccgacctggacctgacggccaacgagaccgcgtccgccacg
cccgaggccgccaacggcggtgaggagcgccgcgaacgccgctcgcgcgaccgctatggc
cgtgaccggcgcgagcgtggcgagcgcggcgcacgcgctgccgaggctgcgagcgcggcc
ccgctgatggagttcgacctgcccgcggcgcaagccgaggccccggcggacgcggagccc
gcgcccgaaccggcacgccgcagctacttcgcggcaccggcggcgcagcccgccgctgca
ccggccgccgagcccatcgccgcgcccgtggcggcagagcctgccgcagcagccccggtg
gcgccccccgcccccgagcaggccgtgaccgtggccgggatagcgcccgccagcgccgag
cccgaggccgtggccgtttctgccccctcggcacaggccgaagagccggcaccgaccggc
ggcatgccgcgcgtgcaggccttcacgctgcccgtggattcgctgatccaggtggcgcag
gcatcgggcctggagtgggtcaactccgacgccgggaagatcgcggccgcccaggccgcg
atcgccgccgagcccaagcccgtgcgcgtgccgcgcgagcggccgcccgcgcctgtgctc
gacgagggcccgctggtgctcgtggaaacccgccgcgacctgcgcgacatgcaactgcct
ttcgagaaggaaggcacggccgcctga
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