Alicycliphilus denitrificans K601: Alide2_2132
Help
Entry
Alide2_2132 CDS
T01463
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
adk
Alicycliphilus denitrificans K601
Pathway
adk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide2_2132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adk03019
]
Alide2_2132
03016 Transfer RNA biogenesis [BR:
adk03016
]
Alide2_2132
Enzymes [BR:
adk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Alide2_2132
Messenger RNA biogenesis [BR:
adk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Alide2_2132
Transfer RNA biogenesis [BR:
adk03016
]
Prokaryotic type
tRNA degradation factors
Alide2_2132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AEB84504
UniProt:
F4G8Z5
LinkDB
All DBs
Position
2231992..2234283
Genome browser
AA seq
763 aa
AA seq
DB search
MYSKKKYAGASATQISSSDEIEGTVQGHRDGHGFVVRDDGEPDIYIPPNEMRAVLHKDRV
RVRIVRQDRRGRPEGRVVEIVERPPQPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATG
AAATGQVVVVELTEPPALFGQPVGRVVEVLGEVDDPGMEVEIAVRKYGVPHEFSEACLAQ
AKALPDKVRAQDKRHRVDLTDIPLVTIDGEDARDFDDAVYCEPAKIGRAKGWRLLVAIAD
VSHYVETGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVERLCMVCDMLVTA
KGEVHAYQFYPAVMLSHARFTYNEVAAVLANTRGPEAARHEERVEDLLNLHDVYRALLAA
RQARGAVDFETTETQIVCDDNGRIEKIEPRVRTEAHRLIEEAMLAANVCSADFIAQAGRP
ALYRVHEGPTPEKQEILRAYLKAMGVGMSIGDEPRPQEFQAIAEATKDRPDAQQIHTMLL
RSMQQAIYTPINSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKSILAGTKYMLPALPTPG
EAQFKLAKRLASKAAEPTIRPAKAGAASVRETQAWEAAGLHCSANERRADEASRDVEAWL
KCQYMREHLGEEYSGVVSAVTSFGIFVTLDALYVEGLVHITELGGEYFKFDEARQELRGE
RTGIRYAIGARVRVQVSRVDLDGRRIDFRLVDEAGDVVPGKSSKAREPGKHQPHEKGRDQ
RMADARPFDKAGGLRRSKDQAPPSGGKKQGSGKSGHKGRRSRG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
ttgtatagcaaaaaaaaatacgctggcgcttccgcgacgcaaatttcctcttccgacgag
attgagggcacggtgcagggccaccgcgatggtcatgggttcgtcgtccgtgacgatggc
gagcccgacatctacataccccccaacgagatgcgcgcggtgctgcacaaggaccgcgtg
cgtgtgcgcatcgtgcgccaggacaggcgcgggaggcccgagggccgcgtggtcgagatc
gtggagcggccgccccagcccatcatcggccggctgctgcaggaaagcggcgtgtggctg
gtcgcgcccgaggacaagcgctacgggcaggacgttttgattcccaagggcgctacggga
gcagcggcaacggggcaggtggtggttgtggagctgacggagccgccggcactgttcggc
cagcccgtggggcgcgtggtcgaggtgctcggcgaggtggacgacccgggcatggaggtc
gagatcgccgtgcgcaagtacggcgtgccgcatgagttttccgaggcctgcctcgcgcag
gccaaggcgttgccagacaaggtgcgcgcgcaggacaagcgtcaccgggtggacctcacg
gacattccgctcgtcaccatcgacggcgaggacgcacgcgatttcgacgacgccgtgtac
tgcgagcccgcgaagatcgggcgggccaagggctggcgcctgctggtggccattgccgac
gtcagccactacgtggagacgggcagcgccatcgacgtggatgcctacgaccgcgccacc
agcgtctacttcccgcggcgggtcatccccatgctgccggagaagctctccaacggcctg
tgctcgctcaatccgcatgtcgagcgcctgtgcatggtgtgcgacatgctggtcaccgcc
aagggcgaggtccatgcctaccagttctatcccgccgtgatgctcagccatgcccgcttc
acctacaacgaggtggcggccgtgctggccaatacgcgggggccggaggcggccaggcac
gaggagcgcgtggaggacctgctcaacctgcacgacgtctatcgcgcgcttctggctgcg
cggcaggcgcgcggagccgtggacttcgagacgacggagacgcagatcgtctgcgacgac
aacggccgcatcgagaagatcgagccgcgcgtgcgcaccgaggcccacaggctgatcgag
gaggccatgctcgcggccaacgtctgcagcgcggacttcatcgcgcaggcgggccgcccc
gcgctgtaccgcgtgcatgaaggccccacgccggaaaagcaggagatcctgcgggcctac
ctgaaagccatgggcgtgggcatgtcgatcggggacgagccgcggccgcaggagttccag
gccatcgccgaggcgaccaaggacaggcccgacgcacagcagatccacaccatgctgctg
cgctccatgcagcaggcgatctacacgcccatcaacagcggccacttcggcttggcgttc
gaggcctacacgcatttcacgagccccatacggcgctatcccgacctgctggtgcaccgt
gtcatcaagtccatcctggctggcacgaagtacatgctgccggccctgccgaccccgggc
gaggcgcaattcaagctcgccaagcgcctggcgtctaaggccgccgagcccaccatcagg
cccgcgaaggcaggagccgccagcgtgcgcgaaacccaggcctgggaggctgcggggctg
cactgcagcgccaacgagcgccgggccgacgaggccagccgcgacgtggaggcatggctc
aagtgccagtacatgcgcgagcatctgggagaggaatacagcggcgtcgtcagcgccgtg
accagcttcggcatcttcgtgaccttggatgccctgtacgtcgaagggctcgtgcacatc
acggaactgggcggcgagtacttcaagttcgacgaggcgcgccaggagctgcgcggcgag
cgcaccggcatccgctatgcgatcggtgcgcgcgtacgcgtgcaggtcagccgcgtggac
ctggacggccgcaggatcgatttccggctggtggacgaggccggggacgtggtgccgggc
aaatcgtccaaggcgcgggagccgggcaagcaccagccgcacgagaagggacgcgaccag
cggatggccgatgcgcgcccgttcgacaaggcgggcggcttgcgccggagcaaggaccag
gccccgccgtccggcggcaagaagcagggctccggcaagagtgggcacaaggggcgcagg
tcgcgcggttga
DBGET
integrated database retrieval system
