Alicycliphilus denitrificans K601: Alide2_2654
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Entry
Alide2_2654 CDS
T01463
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
adk
Alicycliphilus denitrificans K601
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adk03400
]
Alide2_2654
Enzymes [BR:
adk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Alide2_2654
DNA repair and recombination proteins [BR:
adk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Alide2_2654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_22
AAA_30
DEAD
Rpn9_C
AWPM-19
Motif
Other DBs
NCBI-ProteinID:
AEB85011
UniProt:
F4GEX5
LinkDB
All DBs
Position
complement(2775743..2779030)
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AA seq
1095 aa
AA seq
DB search
MNRAAYEHNGRPVSREAFYAIACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEI
LAITFTKKAAGEMRQRLQEWLEQFAHAAPEDLEKELIARGIGLEAARGKREQLRNLYQQL
LASGRPLQIRTFHSWFAALLSTAPLALLQERGLPTHYELLEDDAQAKAEVWRPFLEAVAG
DDALRADYEAIVAVHGRSQTHKALEAALDKRVEFLLSDEAGIVDTSVPPFGEVYERLAGV
EHPGDWLLRRAAGRAMLEDAARALMPLAPSFAAKGEELMAALQAGDWQGVLAALFTKDGE
GTPRAFGKSCPQAVTVAQDEAQTLRDACRQHAAWLHQQRMARLSRRLIECFGAVKREHGW
VDMNDVERTALTLLSDPVLSGWVQERLDARVRHLLVDEFQDTNPLQWQALHAWLAGYAGA
GGGQHPPSVFIVGDPKQSIYRFRRAEPQVFKAAQAFVREALGGDLLACDHTRRNAQGVIG
VVNAAMQAAQAQQEYEGFRAHTTESQDAGRLLRLPPIARTDARVGGGGAADPLAWRDSLN
EPRHEAEETLRMAESAQAAQWVAAQLAAGLPASEIMVLARQRERLARMEEALRALHIPCV
QPEKADLAQAPEVQDLVALLDALVSPAHDLSLARVLKSPLFGADDALLTELALLRRQERH
VHLSWFDLLQKQELLALDCRAIAANLSLYKEWVDSLPPHDALQAIYAHGDVLARFAASAP
APQRAGVLANLRALLGAALQQDGGRYLTPYAFVRALRKGGIAAPARADAQAVRLLTVHGA
KGLEAHSVLLLDTDARPKSAETMAVLVDWPGEEPLPRRFIFLASESSPPPSAEGAMAAER
AERQREALNTLYVAVTRAKRCLALSCVQSGSANPGSWWARLAPLMQQDADPQAGAMGAQD
AGDGAFTLLELPRLPAAPGLPVAAPRQPAQDSLASRQGQAMHALLEQVGVAGLPLAEARA
RGWGQERLAQLAREFALPLPAARAAARMAQAILNGAGAWAWDEAQLELAVNEAPLTHQGQ
GLRLDRLVCLRERRGGARWWVLDYKSAAQPERQGDLVAQLQRYREAVRAQVPGEAVGAAF
LSGDGRLVELGLEEG
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgaatagagctgcctacgaacacaacggccggccggtctcgcgcgaagccttctacgcc
atcgcctgcgatcccgcgcgcagcgtggcggtggaggcctgcgccggcgcgggcaagacc
tggatgctggtctcgcgcatgctgcgcgcgctgctcgacggcagcgcgccgcacgagatc
ctggccatcaccttcaccaagaaggccgccggcgagatgcgccagcgcctgcaggaatgg
ctggagcagttcgcccacgccgcgcccgaggatctcgaaaaggagttgattgcacgcgga
atcggcctcgaagccgcgcggggaaagcgcgagcagctacgaaatttgtaccagcagctg
ttggccagcggccgcccgctgcagatccgcaccttccacagctggtttgccgcgctgctt
tccacggccccgctggcgctgctgcaggagcggggcctgcccacgcactacgagctgctc
gaagacgacgcgcaggccaaggccgaggtttggcggccattcctggaggccgtggccggc
gacgacgcgctgcgcgccgactacgaggccatcgtcgccgtgcatggccgctcgcagacg
cacaaggcgctggaggcggcgctggacaagcgcgtggagttcctgctgtcggacgaggcg
ggcatcgtcgatacgtcggtgccgccgttcggcgaggtctatgaacgcctggccggcgtg
gagcacccgggcgactggctgctgcgccgcgccgccgggcgggccatgctcgaagacgcg
gcgcgcgcgctcatgcccctcgcgccgagcttcgcggccaagggagaggagctgatggcg
gccctgcaggccggcgactggcaaggcgtgctggccgcgctgttcaccaaggacggcgag
ggcacgccgcgcgccttcggcaaatcgtgcccccaggccgtcaccgtcgcgcaggacgag
gcgcagacgctgcgcgacgcctgccgccagcacgccgcatggctgcaccagcagcgcatg
gcgcgcctgtcgcgccgcctgatcgaatgcttcggggccgtcaagcgcgagcatggctgg
gtggacatgaacgacgtggagcgcaccgcgctcacgctgctgtccgaccccgtgctctcc
ggctgggtgcaggagcggctggacgcgcgcgtgcgccacctgctcgtggacgagttccag
gacaccaacccgctgcagtggcaggcgctgcacgcctggctggcgggctatgcgggcgcg
ggcggggggcagcacccgcccagcgtgttcatcgtgggcgaccccaagcagagcatctac
cgctttcgccgcgcagagccccaggtgttcaaggccgcgcaggccttcgtgcgcgaggcg
ctcggcggcgacctgctggcctgcgaccacacccggcgcaatgcgcagggcgtgatcggc
gtggtcaacgctgccatgcaggccgcgcaggcgcagcaggaatacgaaggctttcgcgcg
cacacgaccgaatcgcaggacgcgggccggctgctgcgcctgccgcctatcgcccggacg
gacgcgcgggtcggggggggcggcgcggccgacccgctcgcctggcgcgacagcctgaac
gagccgcgccacgaggccgaggaaaccctgcgcatggccgagagcgcccaggccgcgcaa
tgggtggcggcgcagctggccgccggcctgcccgccagcgagatcatggtgctggcgcga
cagcgcgaacgcctggcgcgcatggaagaggcgctgcgcgccctgcacatcccctgcgtg
cagcccgagaaggccgacctggcccaggctcccgaagtgcaggacctcgtcgcgctgctg
gacgcgctggtctcgcccgcgcacgacctgtcgctggcgcgcgtgctcaagtcgccgctg
ttcggcgccgacgacgcgctgctcaccgaactggccctgctgcgccgccaggaacggcac
gtgcacctgagctggttcgatctgctgcaaaaacaagagctgctggcgcttgactgcagg
gcgatagcggccaatttgtctctatacaaggagtgggtggacagcctccccccgcacgac
gcgctgcaggccatctacgcgcatggcgacgtgctcgcgcgctttgccgccagcgcgccc
gcgccgcagcgtgccggcgtgctggccaacctgcgcgcgctgctgggcgccgcgctgcag
caggacggcgggcgctacctcacgccctacgccttcgtgcgtgcgctcaggaagggcggc
atcgcggcgcccgcgcgcgccgacgcccaggccgtgcgcctgctcaccgtgcacggcgcc
aaggggctcgaagcccacagcgtgctgctgctggacaccgacgcgcgccccaagagcgcc
gagaccatggccgtgctcgtcgactggcctggcgaggagccgctgccccggcgcttcatc
ttcctggccagcgaatcgagcccgccgcccagcgccgagggcgccatggcggcggaacgg
gccgagcgccagcgcgaggcgctgaacaccctgtacgtcgccgtcacgcgcgccaagcgg
tgcctggcgctgtcctgcgtgcaatcgggcagcgccaaccccggcagctggtgggcgcgc
ctggcgccgctcatgcagcaggacgcggacccgcaggccggcgccatgggcgcgcaggat
gcgggcgacggcgccttcaccctgctggagctgccgcgcctgcccgcggcgcccggcctg
cccgtggctgcgccacggcagccggcgcaggacagcctggcatcccgccagggccaggcc
atgcacgcgctgctggagcaggtcggcgtggccggcctgccgctggccgaggcccgcgcc
cggggctggggccaggagcgcctggcgcagcttgcgcgcgaattcgccctgccgctgccc
gccgcccgggccgccgcccgcatggcccaggccatcctcaacggcgcgggcgcctgggcc
tgggacgaggcgcagctggagctggccgtgaacgaggctccgctcacccaccagggtcag
ggcctgcgtctggatcgcctggtctgcctgcgcgagcggcgcggcggcgcgcgctggtgg
gtgctggactacaagagcgccgcgcagcccgagcgccagggcgatctcgtcgcccagctc
cagcgctaccgcgaggccgtgcgggcgcaggtgcccggcgaagcggtaggcgccgcgttc
ctgagcggggacgggcgcctggtggaactggggctggaggagggctga
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