Alicycliphilus denitrificans K601: Alide2_2657
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Entry
Alide2_2657 CDS
T01463
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
adk
Alicycliphilus denitrificans K601
Pathway
adk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide2_2657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
adk03021
]
Alide2_2657
03019 Messenger RNA biogenesis [BR:
adk03019
]
Alide2_2657
Transcription machinery [BR:
adk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Alide2_2657
Messenger RNA biogenesis [BR:
adk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Alide2_2657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
Spore_III_AA
AAA_22
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AEB85014
UniProt:
F4GEX8
LinkDB
All DBs
Position
2782252..2783514
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEALEIENGGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDSSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGPPEQNKHKVMFENLTPLFPKEQMRLERDIKSDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTMMMQHIAHAITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLSRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIEAMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaatgaactcaaggcactgcacgtgtctgaagtcctcaagcaggccgaagcg
cttgagatcgaaaacggcggccgcatgcgcaagcaggagctcatgttcgccatcatcaag
aagcgcgccaaggccggcgagcaggtgtttgccgacggcgtgctcgagatcctgcccgat
ggattcggcttcctgcgcagtcccgattccagctacaccgccagcaccgacgacatctac
atcagccccagccaggtgcggcgcttcaacctgcacaccggcgacatgatcgagggcgag
gtgcgcacgcccaaggacggcgagcgctacttcgcgctgaccaagctcgactccgtcaac
ggcggcccgcccgagcagaacaagcacaaggtgatgttcgagaacctcacgccgctgttc
cccaaggagcagatgcggctggagcgcgacatcaagagcgacgagaacatcaccggccgc
atcatcgacatcatcgcccccatcggccgcggccagcgcgcgctcatcgtcgcgccccca
aagagcggcaagacgatgatgatgcagcacatcgcccacgccatcacggccaaccacccc
gacgtgcacctcatggtgctgctcgtggacgagcgccccgaggaagtgaccgagatgcag
cgctcggtcaagggcgagatcatcgcctccaccttcgacgagcccgccgcgcgccacgtg
cacgtggccgagatggtgatcgagcgcgccaagcgcctcgtggagctgaagaaggacgtg
gtgatcctgctcgactccatcacccgcctggcgcgcgcctacaacaacgtcgtgccctcg
tcgggcaaggtgctctcgggcggcgtggactccaacgcgctgcagcgccccaaacgcttc
ttcggcgcggcgcgcaaggtcgaggaaggtggaagcctgaccatcatcgccacggccctg
gtcgataccggcagccgcatggacgaggtgatcttcgaagagttcaagggcacgggcaac
tgcgaaatccatctgagccggcgcctgtacgagaagcgcgtgttccccgccatcgagctc
aacaagagcggcacgcgccgcgaggaactgctgctcgcgcccgagatcctgcagaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgaggcgatggagctcatgatc
aagaacatgaaggccaccaagaccaacgtggacttcttcgacatgatgcgccggggcggc
tga
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