Alicycliphilus denitrificans K601: Alide2_3487
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Entry
Alide2_3487 CDS
T01463
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
adk
Alicycliphilus denitrificans K601
Pathway
adk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Alide2_3487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adk03019
]
Alide2_3487
Enzymes [BR:
adk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Alide2_3487
Messenger RNA biogenesis [BR:
adk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Alide2_3487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
Utp25_C
P-loop_SecA
AAA_25
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AEB85816
UniProt:
F4GBH1
LinkDB
All DBs
Position
3629107..3630813
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AA seq
568 aa
AA seq
DB search
MTFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQ
IERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLP
KAKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLH
IIQQHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEGFMM
EIERFTKQEIPVQVIEGFGPDEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARQEM
MDRIRTNKATQGTPRGGRQGGGQGEGQRAAQGQGGGGAGRGGNGGRPAGRGQQQPRNAGE
GRRGGGNVGGGGNRRFDDSQPRSENAHLGTQLAHVNLGPRHGGNRTSQPDPMRTSVDSMA
DRGRRGGFRSGGGGGGGGRGPRGGGFGR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagaactgaagctggcgccggcccttttgcaggccgtgcaagaacagggt
taccagaacccgacccccatccaggcccaggccattcccgccgtcctcgcaggccatgac
ctgctcgccggcgcgcagaccggcaccggcaagaccgcggccttcaccctgcccatgctg
caccgcctggcccagggccaggcccccacgagcaggttcggcggccgcggcgtgcgcgcc
ctggtgctcacccccacgcgcgagctcgcggcgcaggtcgaggaatccgtgcgcgcctac
ggcaagcacctggacatcaagtccaccgtgatcttcggcggcgtgggcatgaacccgcag
atcgagcgcatcaagcgcggcgtggacgtgctcgtggccacgcccgggcgcctgctggat
ttgcagcagcagggcttcatggacctgtcccaggtcgagatcctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtgctggcgctgctgccc
aaggccaagcagagcctgctgttctcggccaccttcagcgacgagatccgcgaactggcc
gcgggcctgctgaacgacccgcaaagcatccaggtcacgccgcgcaacaccacggtgcag
cgcatcagccaggtcatccaccccgtgggccggggcaagaagaagcaggtgctgctgcac
atcatccagcagcacgactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtcgccgaatacctgaccaagcacggcgtgcaggccatggcgctgcacggcaac
aagagccagagcgcccgcacgcaggccctggaaggcttcaagagcggccagatccgtgcc
ctggtggccacggacatcgcggcgcgcggcatcgacatcgacgacctgccgcatgtcgtg
aactacgagatccccaacgtgcccgaggactacgtgcaccgcatcggccgcaccggccgc
gccggcaaggaaggccaggccgtgagcctggtctgcatggacgaggaaggcttcatgatg
gagatcgagcgcttcaccaagcaggagatccccgtgcaggtcatcgagggcttcggcccc
gacgagggcgagaaggccgaacccatcgccatgggccgccagaccatctggggcggcgcc
ggcaagccgccgagccgcgaagtcatgcaggcggccgccaaggcggcgcgccaggagatg
atggaccgcatccgcaccaacaaggccacccagggcacgccgcgcggcggccgtcagggc
ggcggccagggtgaaggccagcgcgcggcccagggccagggcggcggcggcgcaggccgt
ggcggcaacggcggccggccggccggccgcggccagcagcagccccgcaacgccggcgaa
gggcgccgcggcggcggcaatgtcggtggcggcggcaaccgccgtttcgacgacagccag
ccgcgcagcgagaacgcccacctgggcacccagctcgcgcacgtgaacctgggcccgcgc
cacggcggcaaccgcaccagccagcccgaccccatgcgcaccagcgtcgacagcatggcc
gaccgcgggcgccgcgggggctttcgcagcggcggtggtggcggcggtggcgggcgcggc
ccgcgcggcggcggcttcggccgctga
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