Alicycliphilus denitrificans K601: Alide2_3817
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Entry
Alide2_3817 CDS
T01463
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
adk
Alicycliphilus denitrificans K601
Brite
KEGG Orthology (KO) [BR:
adk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
adk03016
]
Alide2_3817
Enzymes [BR:
adk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Alide2_3817
Transfer RNA biogenesis [BR:
adk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Alide2_3817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AEB86142
UniProt:
F4GF38
LinkDB
All DBs
Position
complement(3969153..3971231)
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AA seq
692 aa
AA seq
DB search
MHALFDDAGKFLAGRILSEAESSAQIELDSGKRVKVKAANILLKFDKPAPAELLAQARET
AASIELPLAWEFAPEDEFGFADLAREYFSASAPVAEQAGMLLALYEAPHYFRRAGKGRFR
KAPAEILQQALAAIEKKKQVQAQIEAWAGELAAGRCPQPIREQLYKILFRPDKNAPEYKA
VVEASRTAHQAPLALLQAAGAIDSPYQFHWKRFLFENFPKGTGFPPLAAPQPPQDLPLAP
VQAYSIDDSATTEIDDALSVQGLGTGTVTLGIHIAAPGLAIQPGGDLDKVGRQRLSTVYM
PGYKITMLPDEVVQIYTLDAGRANPAVSLYVTIDEATLAITGTETRLERVPVTVNLRHDQ
LDHIVTEAWLQDASVQHENTPQPLLDLREQLSFLHRLAKQLKAGREQVRGKPETFNRPDY
NFRLEGNGKAEPTGSETVRITTRQRGAPLDLIVAEAAIVANSTWGQMLAEHGVPGIYRSQ
ASLAPGIKVRMGTKALPHAGIGVKSYAWATSPLRRYVDLVNQWQIIACARHGKTAALAAP
FKPKDAELFSIISSFDATYGAYNGYQAGMERFWTLKYLQQNQVAELDATVIKDGMNGDFL
VRADTLPLVLPVLGAQGLPRGARVRVKLGAIDEITLDVNGTLLARLDDPADQSDDGPVDE
DEEEAVAGPIAIAVDIDETDGTGTEAGAGQPG
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcactgttcgacgacgccggcaagttccttgccggccgcatcctttccgaggcc
gaaagctcggcgcagatcgagctcgactcgggtaaacgcgtcaaggtcaaggccgccaac
atactgttgaagttcgacaagcccgccccggccgagctgctggcgcaggcgcgcgagacc
gccgcctccatcgagctgccgctggcctgggagttcgcgcccgaggacgagttcggcttc
gccgacctggcgcgcgagtacttctccgcgagcgcccccgtggccgagcaggccggcatg
ctgctggcgctgtacgaggcgccgcactacttccgccgcgcgggcaaggggcgcttcagg
aaggcgccggccgagatcctgcagcaggccctggccgccatcgagaagaagaagcaggtc
caggcgcagatcgaggcctgggcgggcgagctggcggccggccgctgcccgcagcccatc
cgcgagcagctctacaagatactgtttcgccccgacaagaacgcgcccgagtacaaggcc
gtggtcgaggccagccgcacggcgcaccaggcgccgctggcgctgctgcaggcggcgggc
gccatcgattcgccctaccagttccactggaagcgcttcctgttcgagaacttccccaag
ggcacgggctttcccccgctggccgcgccgcagccgccgcaggatctgccgctcgcgccg
gtgcaggcctactccatcgacgattcggccaccaccgagatcgacgacgccctctccgtg
cagggcctgggcacgggcaccgtcacgctgggcatccacatcgccgcgcccggcctggcg
atccagcccgggggcgacctggacaaggtgggccgccagcgcctgtccaccgtctacatg
cccggctacaagatcaccatgctgcccgacgaggtggtgcagatctacacgctggacgcg
ggccgcgccaacccggccgtgtcgctctacgtgaccatcgacgaggcgacgctcgccatc
accggcaccgagacgcgcctggagcgcgtacccgtgacggtgaacctgcgccacgaccag
ctcgaccacatcgtcaccgaggcctggctgcaggacgcctccgttcagcacgaaaacacg
ccccagcccttgctggacctgcgcgagcagctatcattcctgcaccgcttggcaaagcag
ctgaaggccgggcgcgagcaggtgcgcggcaagcccgagaccttcaaccgcccggactac
aacttccgcctggagggcaacggcaaggccgagccgacgggcagcgagacggtgcgcatc
accacgcgccagcgcggcgcgccgctggacctgatcgtggccgaggccgccatcgtcgcc
aacagcacctggggccagatgctggccgagcacggcgtgcccggcatctaccgcagccag
gccagcctggcgcccggcatcaaggtgcgcatgggcaccaaggccctgccgcacgcgggc
atcggcgtgaagagctacgcctgggccacgtcgccgctgcgccgctacgtggacctggtg
aaccagtggcagatcatcgcctgcgcgcgccacggcaagacggccgcgctggccgcgccc
ttcaaaccgaaggacgccgagctgttctccatcattagcagcttcgacgccacctacggc
gcctacaacggctaccaggcgggcatggagcgcttctggacgctcaagtacctgcagcag
aaccaggtcgccgagctggacgccacggtcatcaaggacggcatgaacggcgacttcctc
gtgcgcgccgacaccctgcccctggtgctgcccgtgctgggcgcccagggcctgccgcgc
ggcgcgcgcgtgcgcgtgaagctgggcgccatcgacgagatcacgctggacgtgaacggc
acgctgctcgcgcgcctggacgacccggccgaccagagcgacgacggccccgtggacgag
gacgaggaagaagccgtggcagggcctatcgccatcgcggtggacatcgacgaaaccgat
gggacgggtaccgaggccggcgccggccagccgggataa
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