Auricularia subglabra: AURDEDRAFT_108144
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Entry
AURDEDRAFT_108144 CDS
T03129
Name
(GenBank) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
adl
Auricularia subglabra
Pathway
adl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURDEDRAFT_108144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adl03019
]
AURDEDRAFT_108144
03041 Spliceosome [BR:
adl03041
]
AURDEDRAFT_108144
03009 Ribosome biogenesis [BR:
adl03009
]
AURDEDRAFT_108144
03016 Transfer RNA biogenesis [BR:
adl03016
]
AURDEDRAFT_108144
Enzymes [BR:
adl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AURDEDRAFT_108144
Messenger RNA biogenesis [BR:
adl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AURDEDRAFT_108144
Spliceosome [BR:
adl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AURDEDRAFT_108144
Complex C
U4/U6.U5 tri-SnRNP related factors
AURDEDRAFT_108144
Ribosome biogenesis [BR:
adl03009
]
Eukaryotic type
Pre-60S particles
Helicases
AURDEDRAFT_108144
Transfer RNA biogenesis [BR:
adl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AURDEDRAFT_108144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Hormone_1
Motif
Other DBs
NCBI-ProteinID:
EJD37648
JGI:
108144
UniProt:
J0WW52
LinkDB
All DBs
AA seq
1037 aa
AA seq
DB search
MDVDVRPKKKRKSPPTASGSGSGSGSNEPKKPRLATPVEVVVPVVLDEFETTAKREVAAS
AGLTGAVEADQRLELRHQVRHQVAVPPGYDYVPISQHVPSPNPARVYPFTLDPFQQVAIH
AIERTESVLVSAHTSAGKTVVAEYAIAQCLRNKQRVIYTSPIKALSNQKYREFKAEFGDV
GLMTGDITIEPSSSCLVMTTEILRSMLYRRSDVIAEVGWIIFDEIHWMRDADRGVVWEET
IILLPHSVHHVFLSATIPNAMEFAEWVCKTHGQPCHVVYTDFRPTPLQHYLFPQGGEGIY
LVVNEKGEFREDNFQKAMGMLVEKGGEDPASATSGRNKKGKTKKGGDAKKSGSDISKIVK
MILLKNYHPVIIFAFSKRDCEGLALNMSKVEINTAEEQDMVQTIFTNAIENLSEADRALP
QISQILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKVLFATETFSIGLNMPAKTVVFT
SVRKFDGRDFRDLSGGEYIQMSGRAGRRGLDDRGVVIMMCDEQLEPAAAKAMVKGEADRL
NSAFHLSYNMILNLMRVEGVSPEFMLERCFFQFQTTAEVPKLEKELREAQEAEKKLVVED
EELIKDYYDLRQQLDLLNADFRDVITHPTYCLPFLQVGRLVKVKHDDVDFGWGVVINYQK
RLPPKGKAVTESGPPQSQYVVDVLLNCASGTAIGKDARSGANATPVGVRPCAPDGKGEPV
VVPVLLSTLESISHLRIHLPKDLRPREARDTAWRAVREVQRRFPGGLGLLDPVENMGIKD
DKFRTLLAKIASLEGRLVANKLHNDARLPRLYEAYKRKVDAGERVKAIRRRVQQALDVTQ
LEELKGRKRVLRRLGFTTAEDIVDTKGRVACEISTGDELLLTELIFNGVFNTLAPEQCAA
LLSCFVFDEKSEAPTKLREELTAPLRVLQETAKRIAKVARESKLPVVEDEYVMSFKVELM
ESVLLWCRGASFSELLKLTDTFEGSLIRVFRRLQELLRQMTAAARAIGNEELEEKFKKSS
EMLERPNSVIFCSSLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgacgtgcggccgaagaaaaagcgcaagtcgccgccgacggcgagcggcagc
ggcagcggcagcggctccaacgagccgaagaaaccgcgactcgcgacacccgtcgaggtc
gtcgtgcccgtcgtgctcgacgaatttgagacgactgccaagcgcgaggtcgctgccagt
gctgggcttaccggcgccgtcgaggccgaccagcggctggagctgcgacaccaggtccgc
caccaagtcgcggtgccgcccggctacgactacgtgcccatctcgcagcacgtcccgagc
ccgaacccggcgcgcgtgtacccgttcacgctcgacccgttccagcaggtcgccatccac
gccatcgagcgcaccgagtccgtgctcgtctccgcccacaccagcgccggcaagaccgtc
gtcgccgagtacgcgatcgcccaatgcttgaggaataagcaaagggtcatctatacgagt
cctatcaaggcactcagcaaccaaaagtatcgtgaattcaaggccgaattcggcgacgta
ggcctcatgaccggcgacatcaccatcgagccgtcctcttcttgtctcgtcatgaccacc
gagattctgcgctcaatgctgtaccggcggtcggacgtgatcgcggaggtgggctggatc
atcttcgacgagatccactggatgcgcgacgcggaccgcggtgtggtgtgggaggagacg
atcatcctgctgccgcacagcgtgcaccacgtcttcctctccgcgacgatcccgaacgcg
atggagtttgcggagtgggtgtgcaagacgcacgggcagccgtgccacgtcgtctacacc
gacttccgccccacgccgctgcagcactacctcttcccgcagggcggagagggcatctac
ctcgtcgtgaacgagaagggcgagttccgcgaggacaacttccagaaggccatgggcatg
ctcgtcgagaagggcggcgaggaccccgcgagcgccacgagtgggcgcaacaagaagggc
aagacgaagaagggcggcgacgcgaagaagagcggctcggacattagcaagatcgtcaag
atgatcctgctgaagaactaccaccccgtcatcatcttcgccttctcgaagcgcgactgc
gagggcctcgcgctcaacatgtccaaggtcgagatcaacaccgccgaagagcaggacatg
gtccagaccatcttcaccaacgctatcgagaacctgtccgaggccgaccgcgcgctcccg
caaatttcgcaaatcctcccattactgaaaagggggatcgggatccaccacggcgggctg
ctgccgatcctcaaggaggtgatcgagatcctgttccaggaggggctcatcaaggtgctc
ttcgcgacggagacgttcagcatcgggctcaacatgccggcgaagacggtggtcttcacg
agcgtgcgcaagttcgacgggcgcgacttccgcgacctctccggcggcgagtacatccag
atgagcgggcgcgcgggccggcgtggactggacgaccgcggcgtcgtcatcatgatgtgc
gacgagcagcttgagcccgccgcggcgaaggccatggtcaagggcgaggcagaccgcctc
aactcggcgttccatctgagctataatatgatactgaacttgatgcgcgtcgagggcgtc
tcccccgagttcatgctcgagcgctgtttcttccaatttcagacgaccgccgaggtgccc
aagttggagaaggagctgcgcgaggcgcaggaggcggagaagaaactcgtggtggaggac
gaggagctcatcaaagactactacgacctgcggcagcagctcgacctgctgaacgccgac
ttccgcgacgtcatcacgcaccctacatattgcttgccgttcttacaggtgggccgcctg
gtcaaggtcaagcacgacgacgtggacttcggctggggcgtcgtcatcaactaccagaag
cggctcccgccgaagggcaaggcggtgactgagtccgggccgccgcagagccagtacgtc
gtcgacgtcctgctgaactgcgcgagcggaacggcgatcggcaaggacgcgcgcagcggc
gcaaatgccactcccgtgggcgtgcggccgtgcgcgccggacggcaagggcgagccggtc
gtggtgcccgtcctgctgtcgacgctggaatcgatctcgcacctgcgcatccacctcccg
aaagacctgcggccgcgcgaggcgcgcgacacggcgtggcgcgcggtgcgcgaggtgcag
cgccgcttccccggcgggctcgggctgctcgaccccgtcgagaacatgggcatcaaggac
gacaagttccgcacgctgctcgccaagatcgcgtcgctcgaggggcgcctggtcgccaac
aagctgcataacgacgcgcggctgccgcgcctgtacgaggcgtacaagcgcaaggtcgac
gcgggggagcgcgtcaaggccatccgcaggcgcgtgcagcaggcgctcgacgtcacgcag
ctcgaagagctcaaagggcgcaagcgcgtgttgaggcgattgggcttcacaaccgccgag
gacatcgtcgacacgaagggccgcgtcgcgtgcgagattagcacgggcgacgagctgctg
ctcaccgagctcatcttcaacggcgtcttcaacaccctcgcgccggagcagtgcgccgca
ctgctcagctgcttcgtcttcgacgagaagagcgaggcgccaacgaagctgcgcgaggag
ctcaccgcgccgctgcgcgtgctgcaggagaccgcgaagcgcatcgccaaggtcgcgcgc
gagagcaagctgcccgtcgtcgaggatgagtacgtcatgtcgttcaaggtcgagctcatg
gagtccgtcctgctctggtgccgcggcgcgtcgttctccgagctgctgaagttgacggac
acgttcgagggcagtctaattcgcgtcttcagacgactgcaggagctactccgccagatg
acggccgccgcacgcgcgatcggcaacgaagagctcgaagaaaagttcaaaaagtcgagc
gagatgctcgagcggccgaactcggtcattttctgctcttctctgtatctgtag
DBGET
integrated database retrieval system
