Auricularia subglabra: AURDEDRAFT_109646
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Entry
AURDEDRAFT_109646 CDS
T03129
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
adl
Auricularia subglabra
Pathway
adl03013
Nucleocytoplasmic transport
adl03015
mRNA surveillance pathway
adl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURDEDRAFT_109646
09122 Translation
03013 Nucleocytoplasmic transport
AURDEDRAFT_109646
03015 mRNA surveillance pathway
AURDEDRAFT_109646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
adl03019
]
AURDEDRAFT_109646
03041 Spliceosome [BR:
adl03041
]
AURDEDRAFT_109646
Enzymes [BR:
adl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AURDEDRAFT_109646
Messenger RNA biogenesis [BR:
adl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AURDEDRAFT_109646
Spliceosome [BR:
adl03041
]
Complex C
Other components
EJC/TREX
AURDEDRAFT_109646
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AURDEDRAFT_109646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
EJD55246
JGI:
109646
LinkDB
All DBs
AA seq
440 aa
AA seq
DB search
MSGALDNEELIDYEEDQEVTTTTNGAPAPAAAQNGAAAPAAAAADGDKKNFTGIHSTGFR
DFLLKPELLRSISDLGFEHPSEVQQECIPQAVFGMDVLCQAKSGHGKTAVFVLATLQQLE
PVNGEVSVIVLCHTRELAFQIRNEYIRFAKYMPEIRTSVFYGGTPVQKDAEILKDKAKCP
HIIVATPGRLNALARDKVLDATHVKHFVLDECDKMLEQLDMRRDVQEIFRVTPHHKQVMM
FSATLAKDIRVTCKKFMTNPLEIFVDDETKLTLHGLQQHYVKLDEVAKNRKLNDLLDTLD
FNQVVIFVKSVARANELDKLLKECHFPSICIHSGLPQEERITRYQQFKSFEKRILVATDI
FGRGIDVERVNIVVNYDCPGDADSYLHRVGRAGRFGTKGLAITFISSETDQDVMNQIQSR
FEVAVSELPAHIDPKSYMTS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgcgctcgacaacgaggagctcatcgactacgaggaggaccaggaggtcacc
accaccaccaacggcgcgcccgccccggccgctgctcagaatggcgctgcggctccagcc
gctgccgccgctgatggcgacaagaaaaactttacgggcatccactccacgggtttcaga
gacttcctgctcaagcccgagctgctccgttccatcagcgacttaggtttcgagcacccg
tccgaggttcaacaagagtgcatcccccaggcggtcttcggcatggacgtcctctgccag
gccaagtccggtcacggcaagacagccgtcttcgtgctcgcgacactccagcagctggag
cccgtcaacggcgaagtttcggtcattgtcctctgccacacccgcgagctggccttccag
atccggaacgagtacattcgctttgcgaagtacatgccggaaatccgcaccagcgtcttc
tacggaggcacgccggtgcagaaggacgcagagatcctcaaggacaaggccaagtgcccg
cacatcatcgtggccacgcctggccgcctgaacgccctcgcccgcgacaaggtcctcgat
gcgacacacgtcaagcacttcgttctggacgaatgcgacaaaatgctggagcaactcgac
atgcgccgcgatgtccaagaaatcttccgcgtcaccccgcaccacaaacaggttatgatg
ttcagcgctacccttgcaaaggacattcgcgtcacttgcaagaagttcatgaccaaccct
ctcgaaatcttcgttgacgacgagaccaagctcaccttgcacggcctgcaacaacactac
gtcaagttggatgaagtcgcaaagaaccggaagctcaatgaccttctggacacgctcgac
ttcaaccaggtcgtcatcttcgtcaaatccgtcgcgcgggcaaatgagctcgataagctg
ttgaaggagtgccacttcccgagcatctgtatccactccgggttgccccaggaggagcgc
attacgcgctaccagcagttcaagtcgttcgagaagcgtatcctcgtcgccacggacatt
tttggccgtggtatcgacgtggagcgcgtcaatatcgtcgtgaactatgactgcccgggt
gacgccgatagctacctgcaccgtgtcggccgcgctggccggttcggtacgaagggtctg
gcgatcaccttcatctcgtccgagaccgaccaggacgtgatgaaccagatccagtcgcgg
ttcgaggtcgccgtctccgagctgcctgcgcatatcgaccccaagagctacatgacctcg
taa
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