KEGG   Auricularia subglabra: AURDEDRAFT_110881
Entry
AURDEDRAFT_110881 CDS       T03129                                 
Name
(GenBank) replication factor-a protein
  KO
K07466  replication factor A1
Organism
adl  Auricularia subglabra
Pathway
adl03030  DNA replication
adl03420  Nucleotide excision repair
adl03430  Mismatch repair
adl03440  Homologous recombination
adl03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:adl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AURDEDRAFT_110881
   03420 Nucleotide excision repair
    AURDEDRAFT_110881
   03430 Mismatch repair
    AURDEDRAFT_110881
   03440 Homologous recombination
    AURDEDRAFT_110881
   03460 Fanconi anemia pathway
    AURDEDRAFT_110881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:adl03000]
    AURDEDRAFT_110881
   03032 DNA replication proteins [BR:adl03032]
    AURDEDRAFT_110881
   03400 DNA repair and recombination proteins [BR:adl03400]
    AURDEDRAFT_110881
Transcription factors [BR:adl03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    AURDEDRAFT_110881
DNA replication proteins [BR:adl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    AURDEDRAFT_110881
DNA repair and recombination proteins [BR:adl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     AURDEDRAFT_110881
   MMR (mismatch excision repair)
     AURDEDRAFT_110881
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     AURDEDRAFT_110881
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223 RADX CDC24_OB3 Zn_ribbon_15 Zn_ribbon_6 DUF4503
Other DBs
NCBI-ProteinID: EJD53132
JGI: 110881
LinkDB
AA seq 617 aa
MTIELTSGAIARMCDTTLPADDPVWKTEPILQVVQIKEIVSNKNGGSSNRRRGLVSDGRN
YAPVMFTTQLNQQIEEGKLGRNAVVRVKSMTCNTMQEKRLIVLLEVEVLEALEYKIGEPK
GVDKEGATTAAAGSEAGAESSAAAARAAPLPPAAQQPAPAKQVQQAPRAQQQAASAPAAS
RSGPPQPVYPIEGLSPYQNKWTIQARVTNKSEMKSWSNTKGEGKLFSCTFMDQSGEIRAT
AFNTAAEELFEKLKEGNVYYVTKARVSVAKKKFSNLPNEYEITMDRNTEIEEIVDDDIDV
PLQKYEFVSLKTLDTLNKDEVCDVIGVVQEVGPVNKFLAKTTQRELTKRDLTIVDQSECS
VRLTLWGKQAENWSRDDKPVVAFKGCKVGDFGGRTLSLLSSGSLAIDPDLEESHRLRGWF
DAQGKDATFHSFSSGGGGVASGPIDRLEAMPLAAVREMEIVIDQPQLFVTRAAVVHVKAD
DKMWYAACQRCNKKISEASGKWRCEHCKQNWDEPSYRYMLSIAVADNTSQCWLTAFNDAG
LTIVGQSGNDLHKIKGQDESGFNAIVKKAVGKYYTFSCRAKSETYQDLTRTKYTISRLQP
LDWKQEIDDLEKIIQSY
NT seq 1854 nt   +upstreamnt  +downstreamnt
atgactatcgagcttacctccggcgccattgcgcgcatgtgcgacacgacgcttccggcg
gacgaccctgtatggaagacggagccgattctgcaggttgtgcagatcaaggaaatagtg
tccaacaagaacggcgggtccagcaaccgcaggcgcggcctcgtcagcgacggcagaaac
tacgccccggtcatgttcacgacccagctcaaccagcagattgaggagggcaagctgggc
cgcaacgccgtcgtccgcgtcaagagcatgacctgcaacaccatgcaggagaaacgcctt
atcgtgctcctcgaggtagaggtcctcgaggccctcgagtacaagattggggagcccaag
ggcgtcgacaaggagggcgccacgactgccgccgctggtagcgaggccggcgcggagtca
tccgccgccgccgcccgcgccgccccgctgccgcccgcggctcagcaacctgcgcctgct
aagcaggtccagcaagccccgcgtgctcagcaacaggctgcgtctgcccccgcggcgtcg
cgctccggccctccgcagccggtgtacccgattgagggtctcagcccgtaccagaacaag
tggaccatccaggcgcgcgtcacgaacaagtccgagatgaagtcatggtccaacacgaag
ggtgaaggcaaactcttcagctgcacgttcatggaccagagcggcgagattcgcgccacc
gcgttcaatacggccgccgaggagctctttgagaagcttaaggagggcaacgtttactac
gtcaccaaggcccgcgtctccgttgccaaaaagaagttttccaacctgcccaacgagtat
gagatcaccatggacaggaataccgagatcgaggagatcgtcgacgacgatatcgacgtt
ccgttgcagaagtacgaattcgtgtcactgaagacacttgatactcttaacaaggacgaa
gtctgcgatgtcattggcgttgtccaggaagtcggccccgtgaacaagtttttggcgaag
acgacgcagcgcgagctcacaaagcgcgacttgaccattgttgaccagagcgagtgctcc
gtccgcctcacgctgtggggcaagcaggcggagaactggtcgcgcgacgacaaacccgtc
gttgctttcaaggggtgcaaggtcggcgattttggaggccgcacgctttcgcttctgagc
tctgggtcgttggccattgaccccgacttggaggagtcgcaccgtctgagaggctggttc
gacgctcagggcaaggacgcgacattccactcgttcagcagcgggggaggcggcgtcgcc
agtggccctatcgacaggctggaggccatgccattggccgctgtgcgcgagatggaaatt
gtcatcgaccaaccgcagctgttcgtcacgcgcgcagccgtcgtgcacgtcaaggccgac
gataagatgtggtacgctgcgtgtcagaggtgcaacaagaagatcagcgaagcgagcggc
aagtggcgctgcgagcactgcaagcagaactgggatgagccctcctatcggtacatgctg
agcatcgccgttgcggataacaccagccagtgttggctcacggcgttcaacgacgcgggt
ctcaccatcgttggccagagcgggaacgacctccacaagatcaaggggcaggacgagtcg
ggattcaacgccattgtcaagaaggcggttggcaagtactatactttctcgtgccgcgcc
aaatccgagacgtaccaggacctaactcgcacgaagtacacaatcagtcgtctgcagcca
ctggactggaagcaggagatcgatgaccttgagaaaatcatccagtcgtactga

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