Auricularia subglabra: AURDEDRAFT_140150
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Entry
AURDEDRAFT_140150 CDS
T03129
Name
(GenBank) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
adl
Auricularia subglabra
Pathway
adl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURDEDRAFT_140150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
adl03041
]
AURDEDRAFT_140150
03009 Ribosome biogenesis [BR:
adl03009
]
AURDEDRAFT_140150
Enzymes [BR:
adl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AURDEDRAFT_140150
Spliceosome [BR:
adl03041
]
Complex A
U2 snRNP components
U2 related factors
AURDEDRAFT_140150
Complex B
AURDEDRAFT_140150
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
AURDEDRAFT_140150
Ribosome biogenesis [BR:
adl03009
]
Eukaryotic type
90S particles
Helicases
AURDEDRAFT_140150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
EJD36031
JGI:
140150
LinkDB
All DBs
AA seq
715 aa
AA seq
DB search
MNPTHGWNARSVKAKAVKSVIEGDMNPFTMQPFTPHYKKILRARQQLPVYRLMDEFLKMF
QQQQITIVMAETGSGKTTQIPQLVAYSDLPHRNGKCIACTQPFRVATLSAAKRIADELDV
SLGKQVGYSIRFEEMSEHGTTFLKYMTDGILLREAISDPDLTGYSTIILDDAQERTLATD
MLMGLLKALAKKRSDLKIIIMSATLDAVKFQEFFAFKGNTPAPLFKVPGRTFPIDIFYTR
EPEPDYFGAAIRTVLMIHHQESPGDILLFLTGEEEIEEWCRRLRLEMDDTYPEAVGSLLC
IPLYGSLSLPQQQRIFDPAPQGKPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQK
VYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYMEKDFMKELEEQTYPEILRS
NLANAILALLKVGVKDLVRFDYVDAPAPETLLRGLEMLNFLAALDDDGNLTPLGAMMADF
PVDPQLAKMLIVSPEFKCSNEILTIVAMLSVPNVFSRPPNRRKEADAAKAMLTVPGGDHL
TLLNVYNEYMNNQHDRNWCGNTFLNQRSLAQADNVRAQLKRNMEKYDVDLISNTDQRVFY
LNIRKALVCGFFMQVAHREGEKNTYLTVKDNQAVGLHPSCGLDTTPEWVLFNEFILTSRP
YIRTVTEVKPEWLLEYAPLYYDLSGAGFPDGQTKQALQKVLDRRKGKAASPGPSR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaacccaacgcacggatggaacgcacgaagtgtgaaagccaaggccgttaaaagcgtc
attgaaggcgatatgaaccctttcacaatgcagccctttacgccgcattacaagaagatc
ctcagagcccgccagcagctgcccgtatatcgtctaatggacgagttcctcaaaatgttc
caacaacagcaaatcactatcgtcatggcggagaccggatccgggaagactactcaaatc
ccacaattggtcgcctactcggaccttccgcacagaaatggcaagtgcattgcatgcaca
cagccatttcgggtggcgactttgagcgctgcaaagcgaatcgcagatgaactggacgtg
agcctaggaaagcaggtcggttactcgatccgctttgaggagatgagtgagcacggcacg
acgttcctgaagtacatgacggacggtattctcctgcgtgaagccatatctgacccggac
ctcaccggctactcgaccatcatcctcgacgacgcccaggagcgcacgcttgccacggac
atgctcatgggcctcctcaaggctctcgcgaagaagcgctcggacctcaagatcatcatc
atgtccgccacactcgacgcggtcaagttccaagagttcttcgccttcaagggcaacaca
cccgcgccattattcaaggtgcccggacgcacgttccccatcgacatcttctacacgcgg
gagcccgagccagattacttcggggcggcgatccgaacggtgctaatgatacaccaccag
gagagcccgggcgatatattactcttcttgacgggcgaagaagagattgaggaatggtgt
cgcaggctacgcctcgaaatggacgacacatatcctgaagccgtcgggtcgctgctctgc
atcccgctgtacgggtctctgtcactcccacaacagcagcgcatcttcgaccccgcgccg
cagggcaagcccggcgggccgcccggacgcaaggtcgtcgtgagcacgaatatcgcggag
acgtccctcacgatcgacggcatcgtgtacgtcgtagaccccggcttcagcaagcagaag
gtctacaacccccgcatccgcgtcgagtcgttgctagtttcgcccatctccaaggcgtcg
gcgcagcagcgtgccggacgtgcagggcgtacgcgcccgggcaagtgcttcaggctgtac
atggagaaggacttcatgaaggagctcgaggaacagacgtaccccgagatcctgcgcagc
aacttggccaacgcgattcttgcgctgctcaaagtgggcgtcaaggatctcgtgcggttt
gactatgtggatgccccggccccggaaacgttgctgcgcgggctagagatgctcaacttc
ctcgcggcgctggacgacgacggcaatctgacgccgctcggggcgatgatggcagatttc
ccggtggatccccagctcgccaaaatgctgatcgtcagcccagagttcaagtgcagtaac
gagattctcaccattgtcgcaatgctgtcggtgccaaacgtgttttcgcgcccgccaaac
cgtcgaaaggaggcagacgctgcaaaggcgatgctgaccgtccccggaggcgatcacctg
acgctgctaaatgtttacaacgaatacatgaataaccagcacgaccgcaattggtgcggg
aacaccttcctgaaccagcgttcgctcgcgcaggcggacaacgtacgcgcacagctgaag
cgcaacatggagaaatacgacgtcgacttgattagcaacacggaccagcgcgtgttctac
ctcaatatccgcaaggctctcgtatgcggattcttcatgcaggtcgcgcaccgcgagggc
gagaagaacacgtacctcacggtgaaggacaaccaggccgtcgggctccacccgagctgc
ggcctcgacacgactccggagtgggtgctgttcaacgagtttatcctcacgtccaggccg
tacatccgcacggtgaccgaagtcaagccggagtggctactggagtacgcaccgctgtac
tacgacttgtccggcgcaggattcccggatggtcagacgaagcaggcccttcagaaagtg
ctcgaccgaaggaaaggaaaggcagcttcacccggaccgtcgcgctga
DBGET
integrated database retrieval system
