Auricularia subglabra: AURDEDRAFT_149003 Help Entry AURDEDRAFT_149003 CDS       T03129                                  Name (GenBank) ATP dependent helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism adl  Auricularia subglabra Pathway adl03013   Nucleocytoplasmic transport adl03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:adl00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     AURDEDRAFT_149003    03015 mRNA surveillance pathway     AURDEDRAFT_149003  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:adl03019]     AURDEDRAFT_149003 Enzymes [BR:adl01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      AURDEDRAFT_149003     5.6.2.5  RNA 5'-3' helicase      AURDEDRAFT_149003 Messenger RNA biogenesis [BR:adl03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      AURDEDRAFT_149003    mRNA cycle factors     Common to processing body (P body) and stress granule      AURDEDRAFT_149003 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII Viral_helicase1 SLFN-g3_helicase UvrD-helicase DEAD NPHP3_N Helicase_RecD nSTAND3 Ribosomal_S13_N AAA_16 SRP54 AAA_22 PhoH ATPase AAA_10 ATR1_N AAA_25 AAA Ribosomal_S27e Motif Other DBs NCBI-ProteinID:  EJD53198 JGI:  149003 LinkDB All DBs AA seq 1072 aa AA seqDB search MDLDNFQSFDTTSQYGTASFAEDTASMISGYTTNTTRRQLAEELESLALVDEHNKRSALQ GKGPGGEDDLEGVLDEMKEDGHVDLPPHACSYCGIHSPASVVKCLVCSKWFCNSRGNTSA SHIVNHLVRAKHKEVILHAESPLGETIPECYNCGSKNVFTLGFIPAKSDTVVVLLCRQPC AAVSKDISWNASLWNPLIDDRTFLSWLVKPPTETEQLRARQVSFTQINRLEDLWRDNAQA TLEDLEKPGVDDEPQQVIPRYEDAYQYQNIFGPLVKIEADYDKRLKESQTQSDIIVRWDL GLNQKRVAWFTMPKLESGEVRLAVGDELRLRYAGEMHKPWECIGHVIKIPNNVSDEIALE LRRSDGVPTDCTHNFVADFVWKSTSFDRMQLAMKTFAVDEKSVSGYIYLKLLGHELEPQV IRTTMPKRFSAPGLPELNHSQMYAVKSVLQKPLSLIQGPPGTGKTVTSASIVYHLAKMNH GQVLVCAPSNVAVDQLTEKIHATGLKVVRLTAKSREALDSSISFLTLHQQVANSTSHVEL QKLIQLKNEQGELSSNDERKYKALVRTCEKEILAAADVICTTCVGAGDLRLSKFKFRTVL IDEATQAAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVLIGNR PIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWPAPDTPMFFYQNLGQ EEISSSGTSFLNRTEAANVEKIVTKFFKSGVVPSQIGVITPYEGQRSYIVNYMQFNGSLK KDLYKEIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGVVILG NPKVLSKHPLWHYLLTHYKEKNCLVDGPLSNLQPSMIQFSRPRKALSKAMEQFRRHEVSA KEVMLSPTIGFTEPADRRSGTPSRFDASFYKTHDPLGYIPSDVRSLKSQATYSSGLPSFT TSTAGPFGAAAPGTKRGAFGSYASSIVSQDPSAGPATDNGSVAGSAVPAERTGQVAFSQS DRINRRMSVSSATGLSDLGTISTVDYKSQDDAADLDDVKSQYGGTQAGVTVF NT seq 3219 nt NT seq  +upstreamnt  +downstreamnt atggacctcgacaactttcaatccttcgacaccacctcccagtatggcacagcgagcttt gctgaggacaccgcgtccatgatttccggatacacgaccaatacgacccgccgccagctc gcggaggagctcgagtcattggctctcgtcgacgagcacaacaagcggtcggcgctccag ggcaagggccccggcggcgaggacgacctggagggcgtgctggacgagatgaaagaggac gggcacgtcgacctaccgccgcacgcatgcagctattgtggcatccactcgccggcctca gtcgtcaagtgcctcgtctgctccaagtggttctgcaactcgcgcggcaacacctccgcc tcgcacatcgtcaaccacctcgtgcgcgcgaagcacaaggaggtcatcctccacgcagag agcccgctcggagagaccatcccagagtgctacaactgcggcagcaagaacgttttcacc ctgggcttcatccccgcgaagagcgacacggtcgtcgtgctcttgtgtcgtcagccgtgt gcggcagtgtccaaggacatctcctggaatgcgtccctctggaaccctttgatcgacgac cgcaccttcctatcctggctggtcaagccgcctactgagaccgagcagctcagggcccgt caggtttcgtttacgcagatcaaccgcttggaggatctgtggcgcgacaatgcacaagcc accctcgaggatctcgagaagcctggcgtggacgacgagcctcagcaggtcatcccgcgc tacgaggacgcgtaccagtaccagaatatcttcggaccactggtcaagatcgaggcagat tacgacaaacgcctcaaggagtcccagactcagtcggacatcatcgtccgctgggatctc ggtctcaaccagaagcgcgtcgcgtggttcaccatgcccaagctcgagagcggagaggtc cgcctggccgtcggagacgagttgcgtcttcgctacgccggggaaatgcacaagccgtgg gaatgcattggtcatgtcatcaagatcccgaacaatgtatcggacgagatcgccctggag ctgcgccggtcagacggcgtgccaactgactgcacgcacaacttcgtcgccgacttcgtc tggaagagcacaagcttcgacaggatgcagctggcgatgaagacatttgctgtcgacgag aagagcgtcagcgggtatatctacctgaaactcctcggacatgaactcgaaccgcaggtc attcgcaccaccatgcccaaacggttctcggctccaggattgcctgagctcaaccactcg cagatgtacgcggtgaagagcgtgctgcagaagcccttgagcttgattcaaggacctccc ggtacgggcaagacggtcacatccgcgtcgatcgtataccatctcgcgaagatgaaccac ggccaagtgctcgtctgcgcgccgtcgaacgtcgccgtggatcagctaacggagaagatt catgcgacggggctcaaggtcgtgcggctgacggccaagtcgcgcgaagcgctcgattcg tccatttcgttccttacgctgcaccagcaagtcgcgaacagcacgtcgcacgtggagctg cagaagctcatccagctcaagaacgagcagggcgagctcagctcgaacgacgagcgcaag tacaaggcgctcgtgcgcacctgcgagaaggagatccttgctgcggctgatgtcatttgc accacttgtgtcggtgctggtgaccttcgtcttagcaagttcaagttcaggaccgtgctc atcgacgaggctacccaagctgccgaacctgagtgcatgatcccgctcgtgctcggctgc aagcaagccgtgctggtcggcgaccatcagcaactcggacccgtcattatgaacaagaag gctgcgcgcgcgggactgacccagtccttgttcgagcgtctggttctcatcggcaaccgc cccatccgtctccaggttcaataccgcatgcacccgtgtctgtccgagttcccgtccaac atgttctacgaaggcacgttgcagaacggtgtcaccgctccggagcgtctccgcaagaac gtcgacttcccgtggccggcgccggacacacccatgttcttctaccagaacctgggccag gaggaaatctcgtcgagcggtacctcgttcttgaacaggaccgaggcggccaacgttgag aagattgtgaccaagttcttcaagtccggcgtcgtcccgagccagatcggcgtcatcaca ccatacgagggccagcgctcgtacatcgtcaattacatgcagttcaacgggtcgctgaag aaggatctctacaaggagattgaggttgccagcgtcgacgcgttccaaggtcgtgagaag gactacattatcctcagttgtgtgcggagcaacgagcaccaaggcatcggtttcctgaac gatccccgccgtctgaacgttgcgcttacgcgtgccaaatacggcgtcgtgatcctcggt aaccccaaggtcctcagcaaacacccgctctggcattatctcttgacgcactacaaggag aagaactgccttgtcgacggcccactgagtaacctgcagcccagcatgatccagttcagt cggccgcgcaaggcattgagcaaggctatggagcagttccgcaggcacgaagtcagcgcc aaggaggtcatgttgagtcccacgatcggcttcactgaacccgcagatcgtcgttctggc accccaagccgcttcgatgctagcttctacaagacgcacgacccacttggttacattccc tcagacgtccggtcgctcaagtcgcaggccacgtattcatctggtttaccctcgtttacg acaagcactgctgggccttttggtgctgcagctcctggcaccaaacgtggtgcatttgga agctacgccagctccatcgtgtcgcaagaccctagcgctggccctgcaaccgacaacggt agcgtagccggcagcgctgtacccgcggaacgcacaggccaagttgcattctctcagtcc gaccgcatcaaccgcaggatgtcggtgtcgtctgcaacgggactgtctgatctgggaacc atttccacagtcgactacaagagccaggacgacgcggcggacttggacgacgttaagtcg cagtacggcggcacgcaggcgggcgtcacggtgttttag

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