Auricularia subglabra: AURDEDRAFT_153455
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Entry
AURDEDRAFT_153455 CDS
T03129
Name
(GenBank) pre-mRNA splicing factor
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
adl
Auricularia subglabra
Pathway
adl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
adl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURDEDRAFT_153455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
adl03041
]
AURDEDRAFT_153455
Enzymes [BR:
adl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AURDEDRAFT_153455
Spliceosome [BR:
adl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AURDEDRAFT_153455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
AAA_30
ResIII
Cas3-like_C_2
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
EJD40904
JGI:
153455
UniProt:
J0WYB1
LinkDB
All DBs
AA seq
1095 aa
AA seq
DB search
MELERYISDNSLKLFGLADKSIVDFVLAAASSAKSPDALFSSLRGAGLPDSSDAHSFITE
VYARAPKKSKHKHASASSHKQAEKETKTLVNQRYGFIMEEDEPVSAPAPAKRKDKDSSSR
RERPSRKRETDGRDWESDPEDAPQPKRSRYHSPDPDDQPDDDVPMETPEEAAARRERERA
QDLKERDEFAMRMREKERDKTKKLVEDRSTRAAGEAAEAAERRRYADDPVARVAAMPALR
EHSRREYLTKREMQQIELLRREIQDEEAMFRGMKVSKRELRDLEYKKEVLRLAEERLNID
DKHDGYELPEDYLTEQGKIDKKRKERALYQRYEEAKEKEKEGQFTTDVDQWEAHQTRNST
FKAGAADRPVLVEEYDYVFDESQTIQFVMDTVMKGDQPMSARDRMLQQQIQEAEQRAKTI
EETRKSLPIYDYRTDLLAAIAEHQTLIVVAETGSGKTTQLTQYLHEAGYTKGGQKIGCTQ
PRRVAAMSVAARVAEEMGTKVGYEVGYSIRFEDCTSDKTVIKYMTDGMLLREFLTEPDLA
GYAAIIIDEAHERTLATDILFALVKVGPRTYLVQEFSDHVQDIARFRPELRVLISSATMN
AEKFSEYFDNAPIFLVPGRRFPVDIHYTPQPEANYLHAAITTVFQIHTTQPAGDILVFLT
GQDEIEAAAESLQETTRALGNKVKEMIVCPIYANLPADMQAKIFEPTPEGARKVVLATNI
AETSITIDGVVFVIDPGFVKQNAYNPRTGMASLMVVPCSRASANQRAGRAGRVGPGKAFR
LYTKWAFANELEENTVPEIQRTNLGMVVLLLKSLGINDLIRFEFMDPPPSETLMRALELL
YALGALNDRGELTKLGRRMAEFPVDPMLSKAIIASETYECTEEVLTIISMLSESGSLFYR
PKDKKLHADQARQNFVRPGGDHFTLLNVWEQWAETNYSQQFCYEQYLQFKSLSRARDIRD
QLAGLCDRVEVVVKANPNSNDITPIQKALTAGYFYNTARLQKSGDSYRTTKTNQTVHIHP
SSSLFKKIPPATFVLYYELVMTSKSFMRQVMEIKPVWLLEVAPHFFKPTDLEQLGGGDKK
MPRAVGASSEQERQR
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggagctcgagcggtatatctccgataactcgctcaagctctttggcctggctgacaag
agcatcgtcgacttcgtgctcgccgccgcgtcgtccgccaagtcgcccgatgcactcttc
agttcgctgcgcggcgctgggctacccgactcgtccgacgcacactcgttcattaccgag
gtctacgcgcgcgcgcccaagaagagcaagcacaagcacgcatccgcctcgtcccacaag
caggccgagaaggagaccaagaccctcgtcaaccagcgctatggcttcatcatggaagag
gacgagcccgtatctgcaccagcgcccgcaaagcgcaaggacaaggactcctcgtcgcgc
cgcgagcgacccagccgcaagcgcgagacagacggccgcgactgggagtccgacccggag
gacgcaccgcagcccaaacgctcacgctaccactcgcccgacccggacgaccagccggac
gacgacgtaccgatggagacgccggaggaggctgccgcgcgcagggagcgcgagcgcgcg
caggacctcaaggagcgcgacgaattcgcgatgcgcatgcgcgaaaaggagcgcgacaag
acgaagaaactcgtcgaggaccgctctacccgcgctgctggtgaagccgccgaagctgct
gagcggcggcgatatgcggatgaccctgtcgcgcgcgtcgccgcgatgcctgcgctgcgc
gagcactcgcggagagaatatctcacgaagcgtgagatgcagcaaatcgaactcctgcgg
cgcgaaatccaggacgaggaagccatgttccgcggcatgaaagtctccaaacgcgagttg
cgcgacttggaatacaagaaggaggttctccgacttgccgaggaacgacttaacatcgat
gacaagcatgacggctatgaacttcccgaggactatctcacagagcaaggcaagatcgac
aagaagcggaaggaacgcgcactgtaccaacgctatgaagaagccaaagagaaggagaaa
gagggacagttcaccacggatgtcgaccaatgggaagcccaccagacgcgcaacagcacc
ttcaaggccggcgcggccgaccggccagtgctcgtcgaggagtacgactatgtcttcgac
gagagtcaaacgatccagttcgttatggacaccgtcatgaagggtgaccagcccatgagt
gcgcgggaccggatgctccagcagcagatacaagaggctgagcaacgagcaaaaacgatc
gaagagacgcgaaagtcgctgcccatctacgactaccgcacggaccttctggccgccatc
gcggagcaccaaacgctgatcgtagtcgccgagacggggtcgggcaagacgacgcagctg
acgcagtatctgcacgaggcagggtacacgaaaggcgggcagaagatcgggtgcacgcag
ccacgccgcgtcgccgcaatgagtgtggctgcccgtgtcgcggaggagatgggtaccaag
gtcggctacgaggtcggctactccatccgcttcgaagactgcacgagcgacaagaccgtc
atcaagtacatgacggacggtatgctgctgcgcgagttcctcaccgagcctgacctcgcg
ggctatgcggctatcatcatcgacgaggcgcacgagcggacgcttgcgactgacattctg
tttgctttggttaaggtgggcccacgtacatatctggttcaggagttttctgaccatgtg
caggacattgctcgctttcggcctgagctgcgcgttttgatttccagtgcaacaatgaac
gcggaaaagtttagcgagtacttcgacaacgctcctatcttcctcgtgcccggtcgtcgc
ttccctgtggacatccactacacaccgcagccagaggcgaactaccttcatgcggcgatt
acgactgtcttccagattcacacgacacagcctgcaggcgacatcctggtcttccttacc
ggtcaagacgaaatcgaagccgcagcagaaagcctgcaggagacaacccgcgcactgggg
aacaaggttaaggagatgatcgtgtgcccgatttacgcgaacctgccggcggatatgcag
gccaagatcttcgagccgacgcccgagggcgcacgcaaggtcgtgctcgcgacgaacatc
gccgagaccagcattaccatcgacggtgtcgtcttcgtcattgaccccggcttcgtcaag
cagaacgcgtataatccccgcacggggatggccagtctcatggtcgttccctgttctcgg
gcaagtgcaaaccagcgagcggggcgtgccgggcgtgtgggcccaggcaaggctttccgg
ctgtacaccaagtgggcgtttgccaatgagctcgaggagaacacggtgccggagatccag
cgcacgaacctcggcatggttgtgctgctgctcaagtcgctcggaatcaacgacctcata
cggtttgagttcatggacccgccgccgagcgagacgctcatgcgtgcgctcgagctgctg
tatgcgctcggtgccctcaacgatcgcggagagctcaccaagcttggacggaggatggcg
gagttccccgtcgacccgatgttgtccaaggctatcattgcgagtgagacgtacgagtgc
acggaggaggttctgacgattatctctatgctgtctgaatcgggctcgctgttctatcgg
cccaaggacaagaagctgcacgcggaccaggcgcggcagaacttcgtgcggccgggcgga
gaccacttcacgctgctcaacgtgtgggagcagtgggcggagacgaactactcgcagcag
ttctgctacgagcagtacctgcagttcaagagcctgagccgcgcgcgcgacatccgcgac
cagctcgctgggctgtgcgaccgcgttgaggtcgtcgtgaaggcgaaccccaactcgaac
gacataacgccgatccagaaggcactcaccgcgggctacttctacaacacggcgcgcctg
cagaagagcggcgactcgtaccggacgacgaagacgaatcagactgtgcatatccacccg
tcgtcatcgctcttcaagaagatcccgccggcgacgttcgtgctctactacgagctcgtc
atgacgtcaaagtcgttcatgcggcaggtgatggagatcaagccggtgtggctcctggaa
gtggctccccatttcttcaagccgacggatctcgagcaactaggcggtggtgacaaaaag
atgccaagggcggttggtgcgagcagcgagcaggagcgccaacggtga
DBGET
integrated database retrieval system
